CRO_T010075's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T010075 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G25120 | 0 | ATSRS2|SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2 |
| Arabidopsis thaliana | AT4G25120 | 0 | ATSRS2|SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | cro-novel-102 | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| cro-novel-102 | membrane nucleotide-excision repair, DNA incision, 5'-to lesion plasmodesma organization DNA geometric change regulation of plant-type cell wall cellulose biosynthetic process nucleotide-excision repair involved in interstrand cross-link repair nucleotide-excision repair factor 1 complex maintenance of root meristem identity plant-type cell wall modification involved in multidimensional cell growth response to glucose resolution of meiotic recombination intermediates cellulose microfibril organization double-strand break repair via homologous recombination cell differentiation response to light stimulus formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB polyvinyl alcohol degradation Nucleotide excision repair RNA degradation | miRNA target |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T010075 | scaffolds.min_1000bp | scaffold_2980514 | 5110 | 15817 | + |
Gene detail image
| Genome: |
| CRO_T010075 |
| CDS: |
| CRO_T010075 |
| Transcript: |
| CRO_T010075 |
| Protein: |
| CRO_T010075 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003678 | DNA helicase activity | molecular_function |
| GO:0032392 | DNA geometric change | biological_process |
| GO:0097159 | organic cyclic compound binding | molecular_function |
| GO:1901363 | heterocyclic compound binding | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00580.18 | UvrD-helicase | 281 | 561 | 4.2e-62 |
| PF13361.3 | UvrD_C | 567 | 686 | 3.9e-09 |
| PF13361.3 | UvrD_C | 880 | 949 | 5.8e-11 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 1.69195 | |
| SRR122236 | mixed tissue RA CK | 0.6816505 | |
| SRR122237 | mixed tissue RB CK | 0.678205 | |
| SRR122250 | callus YE 0.3mg/ml CK | 1.18797 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 1.05203 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 0.970335 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 0.977529 | |
| SRR122242 | callus MeJA 100um 0h | 0.875842 | |
| SRR122246 | callus MeJA 100um 6h | 3.50282 | |
| SRR122240 | callus MeJA 100um 12h | 3.53541 | |
| SRR122241 | callus MeJA 100um 24h | 0.888204 | |
| SRR122239 | flower CK 1 | 1.38898 | |
| SRR1271859 | flower CK 2 | 0.6157725 | |
| SRR1144633 | healthy flowers CK | 2.159965 | |
| SRR1144634 | flowers PnWB infected | 1.673535 | |
| SRR122257 | hairy root CK | 2.66764 | |
| SRR122258 | hairy root MeJA 250um CK | 2.72084 | |
| SRR122259 | hairy root MeJA 250um 24h | 0.776759 | |
| SRR122256 | hairy root RebH F CK | 1.32127 | |
| SRR122255 | hairy root TDCi CK | 2.48391 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 3.16651 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 1.95217 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 1.6355 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 2.09175 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 1.2078 | |
| SRR1820238 | Hairy roots CK GUS 3 | 1.06676 | |
| SRR1820233 | Hairy roots CK GUS 4 | 1.28699 | |
| SRR1820326 | Hairy roots CK GUS 5 | 1.23204 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 0.872983 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 1.52005 | |
| SRR122252 | immature leaf CK | 3.1665 | |
| SRR342023 | leaf CK 1 | 4.48316 | |
| SRR342022 | leaf CK 2 | 5.16965 | |
| SRR342019 | leaf CK 3 | 5.134495 | |
| SRR342017 | leaf CK 4 | 3.04604 | |
| SRR1271857 | leaf CK 5 | 0.7447015 | |
| SRR122251 | mature leaf CK | 1.50782 | |
| SRR648705 | root CK 1 | 1.45818 | |
| SRR1271858 | root CK 2 | 0.875449 | |
| SRR122254 | root CK 3 | 2.75053 | |
| SRR648707 | root MeJA 24h | 1.383085 | |
| SRR648709 | root MeJA 24h DSN normalized | 1.26334 | |
| SRR837772 | seedling CK | 0.4549455 | |
| SRR122243 | sterile seedlings AE CK 1 | 3.63822 | |
| SRR122245 | sterile seedlings AE CK 2 | 5.32842 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 2.77357 | |
| SRR122253 | stem CK | 1.25528 | |
| SRR646572 | shoots CK | 1.298505 | |
| SRR647068 | shoots MeJA 6h 1 | 1.411565 | |
| SRR646596 | shoots MeJA 6h 2 | 1.339705 | |
| SRR646604 | shoots MeJA 24h | 0.4454755 | |
| SRR924147 | suspension cells EX ORCA2 CK | 3.19095 | |
| SRR924148 | suspension cells EX ORCA3 CK | 3.270855 |