Gene detail

CRO_T011169's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T011169	succinate dehydrogenase 1-1

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	AT5G66760	1.00E-18	SDH1-1\|succinate dehydrogenase 1-1
Arabidopsis thaliana	AT5G66760	1.00E-18	SDH1-1\|succinate dehydrogenase 1-1
Arabidopsis thaliana	AT2G18450	3.00E-18	SDH1-2\|succinate dehydrogenase 1-2

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	Null
miRNA-Target Relationship	Null

Functional module

Module ID	Function Annotation	Category
CFinderADM000946	succinate dehydrogenase (ubiquinone) activity tricarboxylic acid cycle mitochondrial inner membrane electron transport chain TCA cycle II (plants and fungi) aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) Carbon metabolism flavin adenine dinucleotide binding 3 iron, 4 sulfur cluster binding ErbB signaling pathway Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV protein phosphorylation protein serine/threonine kinase activity 2 iron, 2 sulfur cluster binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase regulation of cellular process 4 iron, 4 sulfur cluster binding Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: GRAS electron carrier activity kinase activity phosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57	global network

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T011169	scaffolds.min_1000bp	scaffold_2960666	13863	14752	+

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T011169
ATGTGGCGCTGCGTTTCGCGTGGCTTTGGCATTGCTTCCAATAGATCCGTCGCCGGCGATTCTTTCCGACCTCAGCTCCACAGGCTCTTCTCTACTACAAAAAAGGTATTTTCATTTCTTGTTTCAGTTCATTTATCAGCTCAGCTATCCAGTCGATTGTGAGGCTTAGGGTTTTGCGTTTATCATTATTATTATTTTCATTTTCTGGCGTTAAATCGTATTTATTCCGAATTTATTTTGGATTCTGCAAGTTTGATTTCAACCAATTGTTTTGCTCGAAGCTGTTATAACTTTAGGATTTACTGATTTACTTGTGATGTTGTCTTTTCGTGGATGAGTATCTTATGGATTATGGAATGCGATTCAGCTTTATTAAATATTTATATTTAATATATTGTTGGAATTATTTAAATTCCGGTGAGCAGGTTGGGGGAGAATCGTATACTGTGGTTGATCATACCTATGACGCGGTAGTGGTAGGTGCTGGCGGTGCAGGACTCAGGGCAGCTATAGGTTTATCCGAGCATGGATTCAACACTGCTTGCATCACCAAGCTCTTCCCTACTCGTTCCCATACTGTTGCAGCTCAGGTATGCCTTTTCTTTCCTTCCATATGTGAACTGGATGCCTTTCAATCCCATGTCAAACAATTTGTGCATGTGAATTAGCTTAGTATTATGAATTTGAAAAAGTGACTATAATCAAATGCCAAATTATGTTTTTAACATACATCTCTTTTCTCGTATTTGCTGAAATATTAACATGGTTGGAATGGATCAATGGGTGGTATTCTACAAGAGGCGCTTGGTATCTAGGCTGTTATCTTACTATTCTATGTGTAGCTCTCCATTGTATTATGGTTTTTTTACTCTGGTAGTATGCGAAGATGA
CDS:
CRO_T011169
ATGTGGCGCTGCGTTTCGCGTGGCTTTGGCATTGCTTCCAATAGATCCGTCGCCGGCGATTCTTTCCGACCTCAGCTCCACAGGCTCTTCTCTACTACAAAAAAGGTTGGGGGAGAATCGTATACTGTGGTTGATCATACCTATGACGCGGTAGTGGTAGGTGCTGGCGGTGCAGGACTCAGGGCAGCTATAGGTTTATCCGAGCATGGATTCAACACTGCTTGCATCACCAAGCTCTTCCCTACTCGTTCCCATACTGTTGCAGCTCAGCTCTCCATTGTATTATGGTTTTTTTACTCTGGTAGTATGCGAAGATGA
Transcript:
CRO_T011169
ATGTGGCGCTGCGTTTCGCGTGGCTTTGGCATTGCTTCCAATAGATCCGTCGCCGGCGATTCTTTCCGACCTCAGCTCCACAGGCTCTTCTCTACTACAAAAAAGGTTGGGGGAGAATCGTATACTGTGGTTGATCATACCTATGACGCGGTAGTGGTAGGTGCTGGCGGTGCAGGACTCAGGGCAGCTATAGGTTTATCCGAGCATGGATTCAACACTGCTTGCATCACCAAGCTCTTCCCTACTCGTTCCCATACTGTTGCAGCTCAGCTCTCCATTGTATTATGGTTTTTTTACTCTGGTAGTATGCGAAGATGA
Protein:
CRO_T011169
MWRCVSRGFGIASNRSVAGDSFRPQLHRLFSTTKKVGGESYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQLSIVLWFFYSGSMRR*

Gene Ontology

GO term	Description	Category
GO:0005743	mitochondrial inner membrane	cellular_component
GO:0006099	tricarboxylic acid cycle	biological_process
GO:0008177	succinate dehydrogenase (ubiquinone) activity	molecular_function
GO:0022900	electron transport chain	biological_process
GO:0050660	flavin adenine dinucleotide binding	molecular_function

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
K00234	SDHA	EC:1.3.5.1	Carbon metabolism	ko01200

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
--	--	--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00890.21	FAD_binding_2	49	93	7.8e-13

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	71.48225
SRR122236	mixed tissue RA CK	42.0603
SRR122237	mixed tissue RB CK	43.09545
SRR122250	callus YE 0.3mg/ml CK	205.173
SRR122247	callus YE 0.3mg/ml 6h	431.882
SRR122248	callus YE 0.3mg/ml 12h	288.257
SRR122249	callus YE 0.3mg/ml 24h	343.516
SRR122242	callus MeJA 100um 0h	349.226
SRR122246	callus MeJA 100um 6h	345.576
SRR122240	callus MeJA 100um 12h	332.154
SRR122241	callus MeJA 100um 24h	737.918
SRR122239	flower CK 1	997.64
SRR1271859	flower CK 2	920.175
SRR1144633	healthy flowers CK	493.854
SRR1144634	flowers PnWB infected	83.0388
SRR122257	hairy root CK	229.564
SRR122258	hairy root MeJA 250um CK	169.922
SRR122259	hairy root MeJA 250um 24h	326.789
SRR122256	hairy root RebH F CK	380.484
SRR122255	hairy root TDCi CK	232.12
SRR122260	hairy root TDCi MeJA 250um CK	186.102
SRR122261	hairy root TDCi MeJA 250um 24h	370.026
SRR1820161	Hairy roots CK BAI1 14	535.529
SRR1820157	Hairy roots CK BAI1 18	500.173
SRR1820149	Hairy roots CK BAI1 19	456.073
SRR1820238	Hairy roots CK GUS 3	418.417
SRR1820233	Hairy roots CK GUS 4	376.076
SRR1820326	Hairy roots CK GUS 5	218.146
SRR2098821	hairy roots OE AS CK rep1	400.94
SRR2099440	hairy roots OE AS CK rep2	185.027
SRR122252	immature leaf CK	115.444
SRR342023	leaf CK 1	166.295
SRR342022	leaf CK 2	104.24305
SRR342019	leaf CK 3	120.6965
SRR342017	leaf CK 4	132.6155
SRR1271857	leaf CK 5	185.2605
SRR122251	mature leaf CK	120.946
SRR648705	root CK 1	371.628
SRR1271858	root CK 2	237.7635
SRR122254	root CK 3	180.869
SRR648707	root MeJA 24h	487.1365
SRR648709	root MeJA 24h DSN normalized	483.912
SRR837772	seedling CK	208.9425
SRR122243	sterile seedlings AE CK 1	394.138
SRR122245	sterile seedlings AE CK 2	337.495
SRR122244	sterile seedlings AF MeJA 6um 12d	438.656
SRR122253	stem CK	105.88
SRR646572	shoots CK	116.457
SRR647068	shoots MeJA 6h 1	191.3075
SRR646596	shoots MeJA 6h 2	138.602
SRR646604	shoots MeJA 24h	274.9575
SRR924147	suspension cells EX ORCA2 CK	534.0455
SRR924148	suspension cells EX ORCA3 CK	416.8895

TOP