CRO_T012520's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T012520 | RAB GTPase homolog A4D |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G12160 | 1.00E-102 | ATRABA4D|RAB GTPASE HOMOLOG A4D |
| Arabidopsis thaliana | AT5G47960 | 5.00E-102 | ATRABA4C|RAB GTPase homolog A4C;SMG1|SMALL MOLECULAR WEIGHT G-PROTEIN 1 |
| Arabidopsis thaliana | AT5G65270 | 4.00E-90 | AtRABA4a|RAB GTPase homolog A4A |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | cro-miR156-2 | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM001693 | pentose catabolic process cellular carbohydrate metabolic process stomatal complex patterning stomatal complex development pentose-phosphate shunt, non-oxidative branch DNA-directed RNA polymerase IV complex DNA-directed RNA polymerase V complex reductive pentose-phosphate cycle ribulose-phosphate 3-epimerase activity pentose phosphate pathway (non-oxidative branch) Calvin-Benson-Bassham cycle Rubisco shunt RNA polymerase II activity DNA-directed RNA polymerase II, core complex small GTPase mediated signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T012520 | scaffolds.min_1000bp | scaffold_3059578 | 3322 | 6258 | + |
Gene detail image
| Genome: |
| CRO_T012520 |
| CDS: |
| CRO_T012520 |
| Transcript: |
| CRO_T012520 |
| Protein: |
| CRO_T012520 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005525 | GTP binding | molecular_function |
| GO:0005768 | endosome | cellular_component |
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K07904 | RAB11A | - | Endocytosis | ko04144 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.19 | Ras | 20 | 180 | 7.7e-62 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 38.6921 | |
| SRR122236 | mixed tissue RA CK | 4.520595 | |
| SRR122237 | mixed tissue RB CK | 3.651245 | |
| SRR122250 | callus YE 0.3mg/ml CK | 14.2792 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 31.2121 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 30.3173 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 23.945 | |
| SRR122242 | callus MeJA 100um 0h | 22.1224 | |
| SRR122246 | callus MeJA 100um 6h | 31.0774 | |
| SRR122240 | callus MeJA 100um 12h | 34.5706 | |
| SRR122241 | callus MeJA 100um 24h | 32.7577 | |
| SRR122239 | flower CK 1 | 24.1786 | |
| SRR1271859 | flower CK 2 | 32.59035 | |
| SRR1144633 | healthy flowers CK | 22.7736 | |
| SRR1144634 | flowers PnWB infected | 25.3784 | |
| SRR122257 | hairy root CK | 14.4404 | |
| SRR122258 | hairy root MeJA 250um CK | 25.2346 | |
| SRR122259 | hairy root MeJA 250um 24h | 30.3281 | |
| SRR122256 | hairy root RebH F CK | 32.3742 | |
| SRR122255 | hairy root TDCi CK | 21.6858 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 29.0537 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 25.7436 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 23.5513 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 19.7927 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 20.4031 | |
| SRR1820238 | Hairy roots CK GUS 3 | 30.3839 | |
| SRR1820233 | Hairy roots CK GUS 4 | 22.7175 | |
| SRR1820326 | Hairy roots CK GUS 5 | 25.72 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 45.8267 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 15.5919 | |
| SRR122252 | immature leaf CK | 3.17273 | |
| SRR342023 | leaf CK 1 | 7.101895 | |
| SRR342022 | leaf CK 2 | 4.961735 | |
| SRR342019 | leaf CK 3 | 10.499915 | |
| SRR342017 | leaf CK 4 | 7.381705 | |
| SRR1271857 | leaf CK 5 | 7.420795 | |
| SRR122251 | mature leaf CK | 4.69881 | |
| SRR648705 | root CK 1 | 35.0871 | |
| SRR1271858 | root CK 2 | 221.8785 | |
| SRR122254 | root CK 3 | 9.97989 | |
| SRR648707 | root MeJA 24h | 36.4736 | |
| SRR648709 | root MeJA 24h DSN normalized | 36.32715 | |
| SRR837772 | seedling CK | 14.15275 | |
| SRR122243 | sterile seedlings AE CK 1 | 14.6742 | |
| SRR122245 | sterile seedlings AE CK 2 | 9.6155 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 13.1305 | |
| SRR122253 | stem CK | 13.0475 | |
| SRR646572 | shoots CK | 8.57072 | |
| SRR647068 | shoots MeJA 6h 1 | 10.994345 | |
| SRR646596 | shoots MeJA 6h 2 | 11.8621 | |
| SRR646604 | shoots MeJA 24h | 8.36128 | |
| SRR924147 | suspension cells EX ORCA2 CK | 43.2556 | |
| SRR924148 | suspension cells EX ORCA3 CK | 39.99545 |