CRO_T019429's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T019429 | membrane-anchored ubiquitin-fold protein 6 precursor |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G22050 | 2.00E-36 | MUB6|membrane-anchored ubiquitin-fold protein 6 precursor |
| Arabidopsis thaliana | AT1G77870 | 2.00E-33 | MUB5|membrane-anchored ubiquitin-fold protein 5 precursor |
| Arabidopsis thaliana | AT3G01050 | 3.00E-27 | MUB1|membrane-anchored ubiquitin-fold protein 1 precursor |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T010070 CRO_T008450 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000692 | retrograde vesicle-mediated transport, Golgi to ER intra-Golgi vesicle-mediated transport retrograde transport, endosome to Golgi small GTPase mediated signal transduction intracellular protein transport GTP binding intracellular Golgi apparatus | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T019429 | scaffolds.min_1000bp | scaffold_3062926 | 32704 | 36287 | + |
Gene detail image
| Genome: |
| CRO_T019429 |
| CDS: |
| CRO_T019429 |
| Transcript: |
| CRO_T019429 |
| Protein: |
| CRO_T019429 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13881.3 | Rad60-SLD_2 | 6 | 102 | 7.4e-39 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 18.2189 | |
| SRR122236 | mixed tissue RA CK | 38.5922 | |
| SRR122237 | mixed tissue RB CK | 39.64975 | |
| SRR122250 | callus YE 0.3mg/ml CK | 22.0159 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 31.4299 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 24.1576 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 20.6199 | |
| SRR122242 | callus MeJA 100um 0h | 18.4665 | |
| SRR122246 | callus MeJA 100um 6h | 33.4856 | |
| SRR122240 | callus MeJA 100um 12h | 40.9051 | |
| SRR122241 | callus MeJA 100um 24h | 34.2647 | |
| SRR122239 | flower CK 1 | 25.4973 | |
| SRR1271859 | flower CK 2 | 19.3837 | |
| SRR1144633 | healthy flowers CK | 26.2506 | |
| SRR1144634 | flowers PnWB infected | 34.6412 | |
| SRR122257 | hairy root CK | 33.6536 | |
| SRR122258 | hairy root MeJA 250um CK | 31.244 | |
| SRR122259 | hairy root MeJA 250um 24h | 37.4642 | |
| SRR122256 | hairy root RebH F CK | 31.8415 | |
| SRR122255 | hairy root TDCi CK | 29.635 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 29.5928 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 38.6374 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 21.5599 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 24.4188 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 32.0269 | |
| SRR1820238 | Hairy roots CK GUS 3 | 29.8681 | |
| SRR1820233 | Hairy roots CK GUS 4 | 22.6952 | |
| SRR1820326 | Hairy roots CK GUS 5 | 28.4001 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 80.052 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 26.3102 | |
| SRR122252 | immature leaf CK | 18.6829 | |
| SRR342023 | leaf CK 1 | 17.5898 | |
| SRR342022 | leaf CK 2 | 15.2434 | |
| SRR342019 | leaf CK 3 | 32.13435 | |
| SRR342017 | leaf CK 4 | 26.35395 | |
| SRR1271857 | leaf CK 5 | 8.95999 | |
| SRR122251 | mature leaf CK | 23.7732 | |
| SRR648705 | root CK 1 | 28.40875 | |
| SRR1271858 | root CK 2 | 37.4499 | |
| SRR122254 | root CK 3 | 23.96 | |
| SRR648707 | root MeJA 24h | 39.84005 | |
| SRR648709 | root MeJA 24h DSN normalized | 42.253 | |
| SRR837772 | seedling CK | 22.2129 | |
| SRR122243 | sterile seedlings AE CK 1 | 20.0619 | |
| SRR122245 | sterile seedlings AE CK 2 | 20.5918 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 20.5158 | |
| SRR122253 | stem CK | 30.6836 | |
| SRR646572 | shoots CK | 14.8114 | |
| SRR647068 | shoots MeJA 6h 1 | 19.02605 | |
| SRR646596 | shoots MeJA 6h 2 | 18.7892 | |
| SRR646604 | shoots MeJA 24h | 14.1292 | |
| SRR924147 | suspension cells EX ORCA2 CK | 24.5858 | |
| SRR924148 | suspension cells EX ORCA3 CK | 26.72285 |