CFinderADM000692's detailed annotation
|
|
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| retrograde vesicle-mediated transport, Golgi to ER | 0.000160669 | GO:0006890 |
| intra-Golgi vesicle-mediated transport | 0.000160669 | GO:0006891 |
| retrograde transport, endosome to Golgi | 0.000160669 | GO:0042147 |
| small GTPase mediated signal transduction | 0.001297508 | GO:0007264 |
| intracellular protein transport | 0.003068351 | GO:0006886 |
| GTP binding | 0.003454059 | GO:0005525 |
| intracellular | 0.013932495 | GO:0005622 |
| Golgi apparatus | 0.013932495 | GO:0005794 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008326 | AT5G57510 (6.00E-18) | unknown protein |
| CRO_T018703 | - | - |
| CRO_T018904 | AT1G21380 (2.00E-132) | Target of Myb protein 1 |
| CRO_T019429 | AT1G22050 (2.00E-36) | MUB6|membrane-anchored ubiquitin-fold protein 6 precursor |
| CRO_T029657 | AT5G10260 (1.00E-112) | AtRABH1e|RAB GTPase homolog H1E |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000365 | defense response U1 snRNA 3'-end processing U5 snRNA 3'-end processing nuclear polyadenylation-dependent mRNA catabolic process exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay nuclear polyadenylation-dependent tRNA catabolic process nuclear polyadenylation-dependent rRNA catabolic process exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) nuclear mRNA surveillance AU-rich element binding U4 snRNA 3'-end processing nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' salidroside biosynthesis apigenin glycosides biosynthesis genistin gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc nuclear exosome (RNase complex) cytoplasmic exosome (RNase complex) sesaminol glucoside biosynthesis response to biotic stimulus curcumin glucoside biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc quercetin gentiotetraside biosynthesis vindoline and vinblastine biosynthesis NADH dehydrogenase (ubiquinone) activity quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity transferase activity, transferring acyl groups flavonoid glucuronidation flavonoid biosynthetic process RNA degradation transferase activity, transferring glycosyl groups Plant hormone signal transduction vacuole | details |
| CFinderADM002033 | shikimate 3-dehydrogenase (NADP+) activity 3-dehydroquinate dehydratase activity chorismate biosynthesis from 3-dehydroquinate sesamin biosynthesis vindoline and vinblastine biosynthesis Biosynthesis of amino acids response to stress oxidation-reduction process transferase activity, transferring acyl groups oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity iron ion binding heme binding hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |