Gene detail

CRO_T029657's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T029657	RAB GTPase homolog H1E

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	AT5G10260	1.00E-112	AtRABH1e\|RAB GTPase homolog H1E
Arabidopsis thaliana	AT2G22290	7.00E-110	ATRAB-H1D\|ARABIDOPSIS RAB GTPASE HOMOLOG H1D;ATRAB6\|ARABIDOPSIS RAB GTPASE HOMOLOG 6;ATRABH1D\|RAB GTPase homolog H1D
Arabidopsis thaliana	AT2G44610	3.00E-107	ATRAB6A;ATRABH1B;RAB6;RAB6A\|Ras-related small GTP-binding family protein

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	Null
miRNA-Target Relationship	Null

Functional module

Module ID	Function Annotation	Category
CFinderADM000692	retrograde vesicle-mediated transport, Golgi to ER intra-Golgi vesicle-mediated transport retrograde transport, endosome to Golgi small GTPase mediated signal transduction intracellular protein transport GTP binding intracellular Golgi apparatus	global network

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T029657	scaffolds.min_1000bp	scaffold_3019493	2652	6077	-

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T029657
CCTTCTTCGGTTTTTTTCCTTTGCCATTATTCTTGATCAAGAGAAAGAAGAAAGACACTCAGATCTGGTTTAGAAATTGCACAAAATGGCAGTGGTTTCGCCGCTAGCTAAGTATAAATTGGTGTTCTTAGGCGATCAATCGGTTGGAAAAACCAGCATCATCACTCGTTTTATGTATGATAAATTTGACACAACTTATCAGGTTAATCTTAATTCACAATCCTACCTCTATTTTTTCTAAAGAAACTTGCTTTTTTTATGTGTTAGTCTCCTAATTGTGATCATTCTGGATTGCAATTCCTCTCGTGAGGACATAAAGGAAATATCAGCACCGTTTAATTTTTTCGTTGATCAAAACTGAGAAATTTGTTGAAATGGCTTGAGAGATTGAAGTGAATTTTATCGATCCTTAAATTGGCAAAGAGGAAGTTTTTCCGGATGCATTTGATGATAGGATGATATTGGAAGATACTCTCTGTTTCTGTGTACAGTGTATTTAAGAATTGTATGCTATGTATCTTTAATCACAATGGAAGCCTGAGTAAAATAATAAATTGAATAGTGTGATTGATGAATTTGGGAAAAGAGCTGTGAATTATTCATTTGTTGGCAGATCTAATAATTCATTCACCATGAAAAGAGATGATTCTTCGTTCTCAATTTTGTTGCATCAATTGTTACTTATACCTGGATTTTGTAGCTATAATCCAGAAATGCATTTTTCTTGACATCATGTAAGCGACAGAGTAGAGAACATTGTATCATCTAATTGTCCACATTTGCTAAATTAGTGGAAGAAAATGTTTTGTATCAATACAAATCTTACATTATATGGCTCTAGAAGATTTGTGGTGCTTACTCATGAATGGTTTGTCATATCAAGTGACCAGCTTCTTTGTGGACATTCAATTAAGAGTCCACAATGTGGATTTTGTATAGATGACCAGCTTTTGTCAGAAAGAAACAGGCTCCTATGCAACTGTTTAAGAGGAAAATCAGGGGGAGAAAATAACCCTCCCCTTCCCCTTCCTTATTTGACAGACTATTCTTGGTTTCTCAAATTGTATAATAATACATTTGAAGCAAGTTAAGCTTCACTAGCCCTCATTCTAGATTAATAAGGCCAAAGAAATTATAGAGCCTCCAGCACAATTGAGAAGCTAGTGAATACTTAAGTATGTGGTTATTCAATTATGACAAGGACGAACACCAGATGTTTGCAATATGTTCTCTACTGAATATTTATCACCTCAAAACAAGCTAGCCATACTGTCTCTTGAAGACTACATTTGGTAGCTTGAACTATGCTTCATATAGATTTGTAAATAGCAAAAAACTTGATTGCTTTTTATGTATCAGAAAAGAGAAATCCAGCGAAACTTTAGGGAATTAAGATGTATCTTAATAGCAAATCTTTTATGTGATCCCATGACACTTTCAAGATTTAAGCTTTTTGCAATTTTATTTTGCAGGCAACAATCGGTATTGATTTTCTGTCAAAAACAATGTATCTTGAAGATCGAACAGTTCGCTTGCAGCTTTGGTAATGTTTCCATGTTATTTAGTTTTAGATAAAATGAATAGGGATGAAAAGAAAAGTAAACATTTGACATAAGCTTGTTGATCTTTACCTCTGCTTCTCTAATGGATTTCAAAATATCTTTTGGAAATTGTCTTGACTGTGTGTCATGCTCATGTTTGTTGTATTTGTACTTCAACATTCTCGGATGGATCTTTTAGAAAGTTTATCTCTATCATGTTTCATGCTGACAATTATTTTACTTGCACTTTGATATTCTTTTCACAGGGATACTGCTGGTCAAGAAAGGTTTAGAAGTCTTATTCCAAGCTACATTAGGGATTCCTCAGTAGCTGTTATTGTATATGATGTTGCCAGTAAGGATATTTAAAGAGGGTTTATTTACAAATTCCCTTTTCTACTGCATTTGTTTCTGTAATGTTTGCCTAATTCTTTTCGCATCTTTGAAATTTTAGTTTAATGAGTTGGTAAGTGGTAATCTTGCTTAATTTTCTCCCCTGCAGATCGACAGTCATTCTTGAATACTTCAAAGTGGATTGAAGAAGTGCGCACTGAACGTGGAAGTGATGTCATTATTGTTCTTGTTGGCAACAAAACTGATCTTGTTGATAAGAGGTGAAAATAGCATTGACTAATTGTGACGGGACTTTTTCTCTTTCGCTATTTGCTTTCATTTTTTACAGTTAAGCATTATATTGTATGCTTCATGGTATGTTATGCAATGAAATGTTTGTTTAGCATACAACTTAACATTATTCCCTTCTTCCTTCAGAGGACCTCCCTCCCAATTTCCTAAAGCAAACGAAAGAAGAGAACAAAGAAACAGTCTTTTCCTTGTCCTTTGAGTGGAAATGAAGCAAAATCTTAAGCATTTTCATCTTTCTAATTCATGGGGTTAGGGATTAAAATTTATGACTTGTAGGTGTTAGGGTGCTCTAGGCTCTAGCAACCATATTGCTTTCTTTATGATAGCTTATGTATTTAAAATTCTTTAGGAAACAATTGTCCCTTGGAAACAAGGAAAACAATATCAACTTTGTAAACTATTGGTTGAGAAACCAGAACTACTACATCATGGTTTCTGTGTAAAGCTTATGAAAGATTTACAATATCTTACTTGTGGAGCTTATACAATTGCTTTTCCTGAGTTTGCTATATCTTGTGGCGTCTAATTAGGCAAGTTTCAATAGAAGAAGGAGATGCTAAGGCTCGCGAGGTTGGAGTTATGTTTATAGAGACCAGTGCTAAAGCAGGTTTCAACATTAAGGTAAGATTTGTATTCTAGTCCCTCCATTGGCTTTCAACTCCCAAGTCACATTTCTCAGAAACATTACCTAATTTGACATGAGAGCTTTATTTGCAGCCTCTGTTTAGGAAAATTGCTGCCGCCTTGCCGGGCATGGAGACCCTCTCTTCCACCAAACAAGAAGACATGGTTGATGTGAATTTGAAGCCTACCACGAATTCTTCGCAGGCAGAACAGCAAGGGGGAGGTTGTGCATGCTAGAAGCTTGTATTAATAAGGTAGCAGTAGCTGGAAATCTCATTCATTACAGAAATCTCCTATGATATAAAGTGCCAATTTTCAAATGTATGTGGTGAGGTTAGAGCCCTTTCAGAATTCCTTATAATAACACTGCAGTGTTTAGTAGAGCTTGAAGAGGGAGCACATAAAACAAGTCCATTTTTTCTAGTATAGTTAGGCCAATCAGGGAGACACTTGATTTTGTTACCACTGTCATAGCTTTCCTTCTCTAGTTTTTGATATCTTGTGCTTATTTTGAAATTGACTTGTGAACCTAATCCCCTCCGTGCAAAATTTTAACTGAAATACACCTCATTCTTGCCGGTTCAGATCATATGTAACATTTCTTTGTAACACTCTC
CDS:
CRO_T029657
ATGGCAGTGGTTTCGCCGCTAGCTAAGTATAAATTGGTGTTCTTAGGCGATCAATCGGTTGGAAAAACCAGCATCATCACTCGTTTTATGTATGATAAATTTGACACAACTTATCAGGCAACAATCGGTATTGATTTTCTGTCAAAAACAATGTATCTTGAAGATCGAACAGTTCGCTTGCAGCTTTGGGATACTGCTGGTCAAGAAAGGTTTAGAAGTCTTATTCCAAGCTACATTAGGGATTCCTCAGTAGCTGTTATTGTATATGATGTTGCCAATCGACAGTCATTCTTGAATACTTCAAAGTGGATTGAAGAAGTGCGCACTGAACGTGGAAGTGATGTCATTATTGTTCTTGTTGGCAACAAAACTGATCTTGTTGATAAGAGGCAAGTTTCAATAGAAGAAGGAGATGCTAAGGCTCGCGAGGTTGGAGTTATGTTTATAGAGACCAGTGCTAAAGCAGGTTTCAACATTAAGCCTCTGTTTAGGAAAATTGCTGCCGCCTTGCCGGGCATGGAGACCCTCTCTTCCACCAAACAAGAAGACATGGTTGATGTGAATTTGAAGCCTACCACGAATTCTTCGCAGGCAGAACAGCAAGGGGGAGGTTGTGCATGCTAG
Transcript:
CRO_T029657
CCTTCTTCGGTTTTTTTCCTTTGCCATTATTCTTGATCAAGAGAAAGAAGAAAGACACTCAGATCTGGTTTAGAAATTGCACAAAATGGCAGTGGTTTCGCCGCTAGCTAAGTATAAATTGGTGTTCTTAGGCGATCAATCGGTTGGAAAAACCAGCATCATCACTCGTTTTATGTATGATAAATTTGACACAACTTATCAGGCAACAATCGGTATTGATTTTCTGTCAAAAACAATGTATCTTGAAGATCGAACAGTTCGCTTGCAGCTTTGGGATACTGCTGGTCAAGAAAGGTTTAGAAGTCTTATTCCAAGCTACATTAGGGATTCCTCAGTAGCTGTTATTGTATATGATGTTGCCAATCGACAGTCATTCTTGAATACTTCAAAGTGGATTGAAGAAGTGCGCACTGAACGTGGAAGTGATGTCATTATTGTTCTTGTTGGCAACAAAACTGATCTTGTTGATAAGAGGCAAGTTTCAATAGAAGAAGGAGATGCTAAGGCTCGCGAGGTTGGAGTTATGTTTATAGAGACCAGTGCTAAAGCAGGTTTCAACATTAAGCCTCTGTTTAGGAAAATTGCTGCCGCCTTGCCGGGCATGGAGACCCTCTCTTCCACCAAACAAGAAGACATGGTTGATGTGAATTTGAAGCCTACCACGAATTCTTCGCAGGCAGAACAGCAAGGGGGAGGTTGTGCATGCTAGAAGCTTGTATTAATAAGGTAGCAGTAGCTGGAAATCTCATTCATTACAGAAATCTCCTATGATATAAAGTGCCAATTTTCAAATGTATGTGGTGAGGTTAGAGCCCTTTCAGAATTCCTTATAATAACACTGCAGTGTTTAGTAGAGCTTGAAGAGGGAGCACATAAAACAAGTCCATTTTTTCTAGTATAGTTAGGCCAATCAGGGAGACACTTGATTTTGTTACCACTGTCATAGCTTTCCTTCTCTAGTTTTTGATATCTTGTGCTTATTTTGAAATTGACTTGTGAACCTAATCCCCTCCGTGCAAAATTTTAACTGAAATACACCTCATTCTTGCCGGTTCAGATCATATGTAACATTTCTTTGTAACACTCTC
Protein:
CRO_T029657
MAVVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKAREVGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTTNSSQAEQQGGGCAC*

Genome:

CRO_T029657

CCTTCTTCGGTTTTTTTCCTTTGCCATTATTCTTGATCAAGAGAAAGAAGAAAGACACTCAGATCTGGTTTAGAAATTGCACAAAATGGCAGTGGTTTCGCCGCTAGCTAAGTATAAATTGGTGTTCTTAGGCGATCAATCGGTTGGAAAAACCAGCATCATCACTCGTTTTATGTATGATAAATTTGACACAACTTATCAGGTTAATCTTAATTCACAATCCTACCTCTATTTTTTCTAAAGAAACTTGCTTTTTTTATGTGTTAGTCTCCTAATTGTGATCATTCTGGATTGCAATTCCTCTCGTGAGGACATAAAGGAAATATCAGCACCGTTTAATTTTTTCGTTGATCAAAACTGAGAAATTTGTTGAAATGGCTTGAGAGATTGAAGTGAATTTTATCGATCCTTAAATTGGCAAAGAGGAAGTTTTTCCGGATGCATTTGATGATAGGATGATATTGGAAGATACTCTCTGTTTCTGTGTACAGTGTATTTAAGAATTGTATGCTATGTATCTTTAATCACAATGGAAGCCTGAGTAAAATAATAAATTGAATAGTGTGATTGATGAATTTGGGAAAAGAGCTGTGAATTATTCATTTGTTGGCAGATCTAATAATTCATTCACCATGAAAAGAGATGATTCTTCGTTCTCAATTTTGTTGCATCAATTGTTACTTATACCTGGATTTTGTAGCTATAATCCAGAAATGCATTTTTCTTGACATCATGTAAGCGACAGAGTAGAGAACATTGTATCATCTAATTGTCCACATTTGCTAAATTAGTGGAAGAAAATGTTTTGTATCAATACAAATCTTACATTATATGGCTCTAGAAGATTTGTGGTGCTTACTCATGAATGGTTTGTCATATCAAGTGACCAGCTTCTTTGTGGACATTCAATTAAGAGTCCACAATGTGGATTTTGTATAGATGACCAGCTTTTGTCAGAAAGAAACAGGCTCCTATGCAACTGTTTAAGAGGAAAATCAGGGGGAGAAAATAACCCTCCCCTTCCCCTTCCTTATTTGACAGACTATTCTTGGTTTCTCAAATTGTATAATAATACATTTGAAGCAAGTTAAGCTTCACTAGCCCTCATTCTAGATTAATAAGGCCAAAGAAATTATAGAGCCTCCAGCACAATTGAGAAGCTAGTGAATACTTAAGTATGTGGTTATTCAATTATGACAAGGACGAACACCAGATGTTTGCAATATGTTCTCTACTGAATATTTATCACCTCAAAACAAGCTAGCCATACTGTCTCTTGAAGACTACATTTGGTAGCTTGAACTATGCTTCATATAGATTTGTAAATAGCAAAAAACTTGATTGCTTTTTATGTATCAGAAAAGAGAAATCCAGCGAAACTTTAGGGAATTAAGATGTATCTTAATAGCAAATCTTTTATGTGATCCCATGACACTTTCAAGATTTAAGCTTTTTGCAATTTTATTTTGCAGGCAACAATCGGTATTGATTTTCTGTCAAAAACAATGTATCTTGAAGATCGAACAGTTCGCTTGCAGCTTTGGTAATGTTTCCATGTTATTTAGTTTTAGATAAAATGAATAGGGATGAAAAGAAAAGTAAACATTTGACATAAGCTTGTTGATCTTTACCTCTGCTTCTCTAATGGATTTCAAAATATCTTTTGGAAATTGTCTTGACTGTGTGTCATGCTCATGTTTGTTGTATTTGTACTTCAACATTCTCGGATGGATCTTTTAGAAAGTTTATCTCTATCATGTTTCATGCTGACAATTATTTTACTTGCACTTTGATATTCTTTTCACAGGGATACTGCTGGTCAAGAAAGGTTTAGAAGTCTTATTCCAAGCTACATTAGGGATTCCTCAGTAGCTGTTATTGTATATGATGTTGCCAGTAAGGATATTTAAAGAGGGTTTATTTACAAATTCCCTTTTCTACTGCATTTGTTTCTGTAATGTTTGCCTAATTCTTTTCGCATCTTTGAAATTTTAGTTTAATGAGTTGGTAAGTGGTAATCTTGCTTAATTTTCTCCCCTGCAGATCGACAGTCATTCTTGAATACTTCAAAGTGGATTGAAGAAGTGCGCACTGAACGTGGAAGTGATGTCATTATTGTTCTTGTTGGCAACAAAACTGATCTTGTTGATAAGAGGTGAAAATAGCATTGACTAATTGTGACGGGACTTTTTCTCTTTCGCTATTTGCTTTCATTTTTTACAGTTAAGCATTATATTGTATGCTTCATGGTATGTTATGCAATGAAATGTTTGTTTAGCATACAACTTAACATTATTCCCTTCTTCCTTCAGAGGACCTCCCTCCCAATTTCCTAAAGCAAACGAAAGAAGAGAACAAAGAAACAGTCTTTTCCTTGTCCTTTGAGTGGAAATGAAGCAAAATCTTAAGCATTTTCATCTTTCTAATTCATGGGGTTAGGGATTAAAATTTATGACTTGTAGGTGTTAGGGTGCTCTAGGCTCTAGCAACCATATTGCTTTCTTTATGATAGCTTATGTATTTAAAATTCTTTAGGAAACAATTGTCCCTTGGAAACAAGGAAAACAATATCAACTTTGTAAACTATTGGTTGAGAAACCAGAACTACTACATCATGGTTTCTGTGTAAAGCTTATGAAAGATTTACAATATCTTACTTGTGGAGCTTATACAATTGCTTTTCCTGAGTTTGCTATATCTTGTGGCGTCTAATTAGGCAAGTTTCAATAGAAGAAGGAGATGCTAAGGCTCGCGAGGTTGGAGTTATGTTTATAGAGACCAGTGCTAAAGCAGGTTTCAACATTAAGGTAAGATTTGTATTCTAGTCCCTCCATTGGCTTTCAACTCCCAAGTCACATTTCTCAGAAACATTACCTAATTTGACATGAGAGCTTTATTTGCAGCCTCTGTTTAGGAAAATTGCTGCCGCCTTGCCGGGCATGGAGACCCTCTCTTCCACCAAACAAGAAGACATGGTTGATGTGAATTTGAAGCCTACCACGAATTCTTCGCAGGCAGAACAGCAAGGGGGAGGTTGTGCATGCTAGAAGCTTGTATTAATAAGGTAGCAGTAGCTGGAAATCTCATTCATTACAGAAATCTCCTATGATATAAAGTGCCAATTTTCAAATGTATGTGGTGAGGTTAGAGCCCTTTCAGAATTCCTTATAATAACACTGCAGTGTTTAGTAGAGCTTGAAGAGGGAGCACATAAAACAAGTCCATTTTTTCTAGTATAGTTAGGCCAATCAGGGAGACACTTGATTTTGTTACCACTGTCATAGCTTTCCTTCTCTAGTTTTTGATATCTTGTGCTTATTTTGAAATTGACTTGTGAACCTAATCCCCTCCGTGCAAAATTTTAACTGAAATACACCTCATTCTTGCCGGTTCAGATCATATGTAACATTTCTTTGTAACACTCTC

CDS:

Transcript:

Protein:

Gene Ontology

GO term	Description	Category
GO:0005525	GTP binding	molecular_function
GO:0005794	Golgi apparatus	cellular_component
GO:0005829	cytosol	cellular_component
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	biological_process
GO:0006891	intra-Golgi vesicle-mediated transport	biological_process
GO:0007264	small GTPase mediated signal transduction	biological_process
GO:0042147	retrograde transport, endosome to Golgi	biological_process

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
--	--	--	--	--

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
--	--	--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.19	Ras	11	169	1.2e-57

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	40.95335
SRR122236	mixed tissue RA CK	13.85795
SRR122237	mixed tissue RB CK	13.46515
SRR122250	callus YE 0.3mg/ml CK	12.674
SRR122247	callus YE 0.3mg/ml 6h	31.7002
SRR122248	callus YE 0.3mg/ml 12h	17.9701
SRR122249	callus YE 0.3mg/ml 24h	13.4702
SRR122242	callus MeJA 100um 0h	15.6934
SRR122246	callus MeJA 100um 6h	57.5592
SRR122240	callus MeJA 100um 12h	74.1098
SRR122241	callus MeJA 100um 24h	45.2545
SRR122239	flower CK 1	37.0935
SRR1271859	flower CK 2	18.5053
SRR1144633	healthy flowers CK	19.07175
SRR1144634	flowers PnWB infected	31.5906
SRR122257	hairy root CK	18.0407
SRR122258	hairy root MeJA 250um CK	20.7003
SRR122259	hairy root MeJA 250um 24h	71.9724
SRR122256	hairy root RebH F CK	33.9398
SRR122255	hairy root TDCi CK	41.5624
SRR122260	hairy root TDCi MeJA 250um CK	29.4932
SRR122261	hairy root TDCi MeJA 250um 24h	70.1159
SRR1820161	Hairy roots CK BAI1 14	14.7055
SRR1820157	Hairy roots CK BAI1 18	12.0852
SRR1820149	Hairy roots CK BAI1 19	14.8008
SRR1820238	Hairy roots CK GUS 3	23.7544
SRR1820233	Hairy roots CK GUS 4	16.0075
SRR1820326	Hairy roots CK GUS 5	15.52685
SRR2098821	hairy roots OE AS CK rep1	152.411
SRR2099440	hairy roots OE AS CK rep2	26.7403
SRR122252	immature leaf CK	7.57838
SRR342023	leaf CK 1	11.20375
SRR342022	leaf CK 2	14.04075
SRR342019	leaf CK 3	14.6532
SRR342017	leaf CK 4	8.02582
SRR1271857	leaf CK 5	2.176125
SRR122251	mature leaf CK	7.6983
SRR648705	root CK 1	22.8596
SRR1271858	root CK 2	33.77585
SRR122254	root CK 3	14.8463
SRR648707	root MeJA 24h	40.3038
SRR648709	root MeJA 24h DSN normalized	39.0303
SRR837772	seedling CK	12.92185
SRR122243	sterile seedlings AE CK 1	16.8119
SRR122245	sterile seedlings AE CK 2	39.6086
SRR122244	sterile seedlings AF MeJA 6um 12d	25.1756
SRR122253	stem CK	24.8332
SRR646572	shoots CK	5.840065
SRR647068	shoots MeJA 6h 1	26.10225
SRR646596	shoots MeJA 6h 2	26.2502
SRR646604	shoots MeJA 24h	18.58975
SRR924147	suspension cells EX ORCA2 CK	43.0036
SRR924148	suspension cells EX ORCA3 CK	23.7177

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