CRO_T020939's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T020939 | conserved hypothetical protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G74860 | 6.00E-22 | unknown protein |
| Arabidopsis thaliana | AT1G74860 | 6.00E-22 | unknown protein |
| Arabidopsis thaliana | AT1G19010 | 8.00E-14 | unknown protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000946 | succinate dehydrogenase (ubiquinone) activity tricarboxylic acid cycle mitochondrial inner membrane electron transport chain TCA cycle II (plants and fungi) aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) Carbon metabolism flavin adenine dinucleotide binding 3 iron, 4 sulfur cluster binding ErbB signaling pathway Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV protein phosphorylation protein serine/threonine kinase activity 2 iron, 2 sulfur cluster binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase regulation of cellular process 4 iron, 4 sulfur cluster binding Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: GRAS electron carrier activity kinase activity phosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T020939 | scaffolds.min_1000bp | scaffold_3016989 | 21822 | 25202 | + |
Gene detail image
| Genome: |
| CRO_T020939 |
| CDS: |
| CRO_T020939 |
| Transcript: |
| CRO_T020939 |
| Protein: |
| CRO_T020939 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 10.11456 | |
| SRR122236 | mixed tissue RA CK | 5.56209 | |
| SRR122237 | mixed tissue RB CK | 5.711115 | |
| SRR122250 | callus YE 0.3mg/ml CK | 9.38522 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 8.99835 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 14.327 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 13.2826 | |
| SRR122242 | callus MeJA 100um 0h | 4.01105 | |
| SRR122246 | callus MeJA 100um 6h | 5.57627 | |
| SRR122240 | callus MeJA 100um 12h | 3.69898 | |
| SRR122241 | callus MeJA 100um 24h | 1.13151 | |
| SRR122239 | flower CK 1 | 1.14948 | |
| SRR1271859 | flower CK 2 | 1.022257 | |
| SRR1144633 | healthy flowers CK | 4.93733 | |
| SRR1144634 | flowers PnWB infected | 19.45195 | |
| SRR122257 | hairy root CK | 9.5846 | |
| SRR122258 | hairy root MeJA 250um CK | 11.693 | |
| SRR122259 | hairy root MeJA 250um 24h | 3.14129 | |
| SRR122256 | hairy root RebH F CK | 10.5604 | |
| SRR122255 | hairy root TDCi CK | 12.7532 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 16.1091 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 7.13076 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 7.02225 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 6.33855 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 7.69814 | |
| SRR1820238 | Hairy roots CK GUS 3 | 12.0551 | |
| SRR1820233 | Hairy roots CK GUS 4 | 13.0522 | |
| SRR1820326 | Hairy roots CK GUS 5 | 14.524 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 6.70415 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 9.70049 | |
| SRR122252 | immature leaf CK | 7.56463 | |
| SRR342023 | leaf CK 1 | 10.3196 | |
| SRR342022 | leaf CK 2 | 12.37045 | |
| SRR342019 | leaf CK 3 | 15.2375 | |
| SRR342017 | leaf CK 4 | 17.22255 | |
| SRR1271857 | leaf CK 5 | 21.32825 | |
| SRR122251 | mature leaf CK | 11.9273 | |
| SRR648705 | root CK 1 | 7.735145 | |
| SRR1271858 | root CK 2 | 12.95485 | |
| SRR122254 | root CK 3 | 12.4917 | |
| SRR648707 | root MeJA 24h | 3.647635 | |
| SRR648709 | root MeJA 24h DSN normalized | 3.448325 | |
| SRR837772 | seedling CK | 10.59285 | |
| SRR122243 | sterile seedlings AE CK 1 | 7.48162 | |
| SRR122245 | sterile seedlings AE CK 2 | 6.33484 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 8.00269 | |
| SRR122253 | stem CK | 6.18308 | |
| SRR646572 | shoots CK | 17.47515 | |
| SRR647068 | shoots MeJA 6h 1 | 11.1536 | |
| SRR646596 | shoots MeJA 6h 2 | 9.44281 | |
| SRR646604 | shoots MeJA 24h | 3.80535 | |
| SRR924147 | suspension cells EX ORCA2 CK | 8.44673 | |
| SRR924148 | suspension cells EX ORCA3 CK | 8.11225 |