CRO_T028344's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T028344 | Ribosomal protein S19e family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G02080 | 1.00E-69 | Ribosomal protein S19e family protein |
| Arabidopsis thaliana | AT5G61170 | 2.00E-68 | Ribosomal protein S19e family protein |
| Arabidopsis thaliana | AT5G15520 | 6.00E-68 | Ribosomal protein S19e family protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000312 | Fatty acid elongation Basal transcription factors cytokinins 7-N-glucoside biosynthesis cytokinins 9-N-glucoside biosynthesis quercetin gentiotetraside biosynthesis quercetin glucoside biosynthesis (Allium) very long chain fatty acid biosynthesis I quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity transferase activity, transferring acyl groups other than amino-acyl groups Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: TCP | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T028344 | scaffolds.min_1000bp | scaffold_3058752 | 18719 | 21266 | + |
Gene detail image
| Genome: |
| CRO_T028344 |
| CDS: |
| CRO_T028344 |
| Transcript: |
| CRO_T028344 |
| Protein: |
| CRO_T028344 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000028 | ribosomal small subunit assembly | biological_process |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| GO:0005618 | cell wall | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0006412 | translation | biological_process |
| GO:0009506 | plasmodesma | cellular_component |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K02966 | RP-S19e | - | Ribosome | ko03010 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01090.16 | Ribosomal_S19e | 6 | 140 | 1e-56 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 60.70655 | |
| SRR122236 | mixed tissue RA CK | 11.676295 | |
| SRR122237 | mixed tissue RB CK | 11.87038 | |
| SRR122250 | callus YE 0.3mg/ml CK | 73.5039 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 89.824 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 63.6349 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 72.9749 | |
| SRR122242 | callus MeJA 100um 0h | 75.3868 | |
| SRR122246 | callus MeJA 100um 6h | 46.4515 | |
| SRR122240 | callus MeJA 100um 12h | 33.6221 | |
| SRR122241 | callus MeJA 100um 24h | 60.52 | |
| SRR122239 | flower CK 1 | 28.8275 | |
| SRR1271859 | flower CK 2 | 41.80485 | |
| SRR1144633 | healthy flowers CK | 47.5608 | |
| SRR1144634 | flowers PnWB infected | 49.708 | |
| SRR122257 | hairy root CK | 54.6165 | |
| SRR122258 | hairy root MeJA 250um CK | 57.2162 | |
| SRR122259 | hairy root MeJA 250um 24h | 38.2146 | |
| SRR122256 | hairy root RebH F CK | 64.5701 | |
| SRR122255 | hairy root TDCi CK | 40.4669 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 43.7134 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 38.3296 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 86.1945 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 69.2624 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 61 | |
| SRR1820238 | Hairy roots CK GUS 3 | 61.2811 | |
| SRR1820233 | Hairy roots CK GUS 4 | 72.6074 | |
| SRR1820326 | Hairy roots CK GUS 5 | 49.5693 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 63.6953 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 55.866 | |
| SRR122252 | immature leaf CK | 34.3095 | |
| SRR342023 | leaf CK 1 | 59.90145 | |
| SRR342022 | leaf CK 2 | 38.9087 | |
| SRR342019 | leaf CK 3 | 28.8917 | |
| SRR342017 | leaf CK 4 | 34.7049 | |
| SRR1271857 | leaf CK 5 | 55.9148 | |
| SRR122251 | mature leaf CK | 29.4587 | |
| SRR648705 | root CK 1 | 37.60075 | |
| SRR1271858 | root CK 2 | 52.58325 | |
| SRR122254 | root CK 3 | 40.2895 | |
| SRR648707 | root MeJA 24h | 37.56295 | |
| SRR648709 | root MeJA 24h DSN normalized | 39.6807 | |
| SRR837772 | seedling CK | 39.613 | |
| SRR122243 | sterile seedlings AE CK 1 | 44.4734 | |
| SRR122245 | sterile seedlings AE CK 2 | 41.2034 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 35.4788 | |
| SRR122253 | stem CK | 39.8672 | |
| SRR646572 | shoots CK | 72.696 | |
| SRR647068 | shoots MeJA 6h 1 | 78.64135 | |
| SRR646596 | shoots MeJA 6h 2 | 61.21115 | |
| SRR646604 | shoots MeJA 24h | 64.59305 | |
| SRR924147 | suspension cells EX ORCA2 CK | 75.10415 | |
| SRR924148 | suspension cells EX ORCA3 CK | 65.2723 |