CRO_T029227's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T029227 | Pentatricopeptide repeat (PPR) superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G20730 | 1.00E-58 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Arabidopsis thaliana | AT3G61170 | 2.00E-50 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Arabidopsis thaliana | AT4G18520 | 1.00E-48 | SEL1|SEEDLING LETHAL 1 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM001767 | farnesol dehydrogenase activity vacuolar membrane farnesol metabolic process ADP binding Terpenoid backbone biosynthesis regulation of signal transduction negative regulation of abscisic acid-activated signaling pathway protein processing coenzyme binding | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T029227 | scaffolds.min_1000bp | scaffold_3064851 | 28825 | 31464 | - |
Gene detail image
| Genome: |
| CRO_T029227 |
| CDS: |
| CRO_T029227 |
| Transcript: |
| CRO_T029227 |
| Protein: |
| CRO_T029227 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.17 | PPR | 116 | 143 | 0.0074 |
| PF01535.17 | PPR | 144 | 174 | 3.4e-05 |
| PF01535.17 | PPR | 226 | 253 | 0.0068 |
| PF01535.17 | PPR | 298 | 321 | 0.5 |
| PF13041.3 | PPR_2 | 324 | 371 | 39.6 |
| PF01535.17 | PPR | 399 | 421 | 4.5e-05 |
| PF13041.3 | PPR_2 | 426 | 469 | 46.4 |
| PF01535.17 | PPR | 480 | 504 | 0.001 |
| PF14432.3 | DYW_deaminase | 579 | 624 | 1.9e-07 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 1.747405 | |
| SRR122236 | mixed tissue RA CK | 1.97736 | |
| SRR122237 | mixed tissue RB CK | 2.570465 | |
| SRR122250 | callus YE 0.3mg/ml CK | 4.08907 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 3.79171 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 3.04173 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 3.54095 | |
| SRR122242 | callus MeJA 100um 0h | 3.75703 | |
| SRR122246 | callus MeJA 100um 6h | 5.54455 | |
| SRR122240 | callus MeJA 100um 12h | 4.41136 | |
| SRR122241 | callus MeJA 100um 24h | 2.80322 | |
| SRR122239 | flower CK 1 | 4.4059 | |
| SRR1271859 | flower CK 2 | 2.79838 | |
| SRR1144633 | healthy flowers CK | 2.461735 | |
| SRR1144634 | flowers PnWB infected | 2.183785 | |
| SRR122257 | hairy root CK | 6.0367 | |
| SRR122258 | hairy root MeJA 250um CK | 4.489 | |
| SRR122259 | hairy root MeJA 250um 24h | 5.26168 | |
| SRR122256 | hairy root RebH F CK | 4.39459 | |
| SRR122255 | hairy root TDCi CK | 5.04261 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 4.72674 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 4.07967 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 4.89068 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 4.85682 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 4.05033 | |
| SRR1820238 | Hairy roots CK GUS 3 | 4.81168 | |
| SRR1820233 | Hairy roots CK GUS 4 | 4.58863 | |
| SRR1820326 | Hairy roots CK GUS 5 | 4.44614 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 1.55944 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 1.7021 | |
| SRR122252 | immature leaf CK | 7.38753 | |
| SRR342023 | leaf CK 1 | 8.51014 | |
| SRR342022 | leaf CK 2 | 5.49532 | |
| SRR342019 | leaf CK 3 | 6.354025 | |
| SRR342017 | leaf CK 4 | 5.866475 | |
| SRR1271857 | leaf CK 5 | 6.75209 | |
| SRR122251 | mature leaf CK | 5.60644 | |
| SRR648705 | root CK 1 | 1.77466 | |
| SRR1271858 | root CK 2 | 2.960175 | |
| SRR122254 | root CK 3 | 6.013 | |
| SRR648707 | root MeJA 24h | 1.36041 | |
| SRR648709 | root MeJA 24h DSN normalized | 1.70197 | |
| SRR837772 | seedling CK | 2.965625 | |
| SRR122243 | sterile seedlings AE CK 1 | 4.20481 | |
| SRR122245 | sterile seedlings AE CK 2 | 3.56438 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 4.70111 | |
| SRR122253 | stem CK | 5.71415 | |
| SRR646572 | shoots CK | 3.019435 | |
| SRR647068 | shoots MeJA 6h 1 | 3.723665 | |
| SRR646596 | shoots MeJA 6h 2 | 4.55538 | |
| SRR646604 | shoots MeJA 24h | 1.69838 | |
| SRR924147 | suspension cells EX ORCA2 CK | 2.457225 | |
| SRR924148 | suspension cells EX ORCA3 CK | 1.843905 |