CRO_T033375's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T033375 | DHBP synthase RibB-like alpha/beta domain |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G01920 | 1.00E-96 | DHBP synthase RibB-like alpha/beta domain |
| Arabidopsis thaliana | AT3G01920 | 1.00E-96 | DHBP synthase RibB-like alpha/beta domain |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | cro-novel-43 | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000892 | brassinosteroids inactivation monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidation-reduction process Cytochrome_P450, Cytochrome P450: CYP720A Cytochrome_P450, Cytochrome P450: CYP721A Cytochrome_P450, Cytochrome P450: CYP734A diphosphomevalonate decarboxylase activity heme binding iron ion binding ferredoxin-NADP+ reductase activity isopentenyl diphosphate biosynthetic process, mevalonate pathway pyrimidine deoxyribonucleotides dephosphorylation mevalonate pathway I superpathway of scopolin and esculin biosynthesis secologanin synthase activity sulfotransferase activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor single-organism biosynthetic process organic substance biosynthetic process protein domain specific binding Monoterpenoid biosynthesis phosphate acquisition photosynthesis light reactions MAPK signaling pathway - yeast Brassinosteroid biosynthesis Transcription_related, Transcription factor: MYB-related O-methyltransferase activity plastoglobule integral component of membrane cell part membrane part cellular metabolic process brassinosteroid biosynthetic process aromatic compound biosynthetic process brassinosteroid homeostasis acid phosphatase activity sterol metabolic process phenylpropanoids methylation (ice plant) suberin monomers biosynthesis Pyrimidine metabolism Glutathione metabolism Terpenoid backbone biosynthesis Transcription_related, Transcription factor: ERF multicellular organism development | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T033375 | scaffolds.min_1000bp | scaffold_2987893 | 67459 | 71210 | - |
Gene detail image
| Genome: |
| CRO_T033375 |
| CDS: |
| CRO_T033375 |
| Transcript: |
| CRO_T033375 |
| Protein: |
| CRO_T033375 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01300.15 | Sua5_yciO_yrdC | 192 | 345 | 3e-27 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 12.12345 | |
| SRR122236 | mixed tissue RA CK | 27.2395 | |
| SRR122237 | mixed tissue RB CK | 29.199 | |
| SRR122250 | callus YE 0.3mg/ml CK | 17.5053 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 9.58652 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 15.2705 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 13.5739 | |
| SRR122242 | callus MeJA 100um 0h | 11.5218 | |
| SRR122246 | callus MeJA 100um 6h | 19.2633 | |
| SRR122240 | callus MeJA 100um 12h | 14.8464 | |
| SRR122241 | callus MeJA 100um 24h | 7.81291 | |
| SRR122239 | flower CK 1 | 4.7116 | |
| SRR1271859 | flower CK 2 | 5.08603 | |
| SRR1144633 | healthy flowers CK | 8.0698 | |
| SRR1144634 | flowers PnWB infected | 17.08835 | |
| SRR122257 | hairy root CK | 3.85769 | |
| SRR122258 | hairy root MeJA 250um CK | 2.8104 | |
| SRR122259 | hairy root MeJA 250um 24h | 1.60674 | |
| SRR122256 | hairy root RebH F CK | 5.87104 | |
| SRR122255 | hairy root TDCi CK | 3.39001 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 2.97139 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 1.89442 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 12.7453 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 9.30051 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 10.1325 | |
| SRR1820238 | Hairy roots CK GUS 3 | 9.07968 | |
| SRR1820233 | Hairy roots CK GUS 4 | 8.47342 | |
| SRR1820326 | Hairy roots CK GUS 5 | 7.171495 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 0.697105 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 2.91243 | |
| SRR122252 | immature leaf CK | 11.2199 | |
| SRR342023 | leaf CK 1 | 10.46945 | |
| SRR342022 | leaf CK 2 | 10.21325 | |
| SRR342019 | leaf CK 3 | 11.8174 | |
| SRR342017 | leaf CK 4 | 14.54675 | |
| SRR1271857 | leaf CK 5 | 20.94795 | |
| SRR122251 | mature leaf CK | 18.5337 | |
| SRR648705 | root CK 1 | 8.04997 | |
| SRR1271858 | root CK 2 | 7.306095 | |
| SRR122254 | root CK 3 | 15.8266 | |
| SRR648707 | root MeJA 24h | 5.109575 | |
| SRR648709 | root MeJA 24h DSN normalized | 5.21681 | |
| SRR837772 | seedling CK | 15.2714 | |
| SRR122243 | sterile seedlings AE CK 1 | 11.5431 | |
| SRR122245 | sterile seedlings AE CK 2 | 8.82349 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 9.56982 | |
| SRR122253 | stem CK | 6.76521 | |
| SRR646572 | shoots CK | 20.31885 | |
| SRR647068 | shoots MeJA 6h 1 | 13.19945 | |
| SRR646596 | shoots MeJA 6h 2 | 14.7491 | |
| SRR646604 | shoots MeJA 24h | 18.15125 | |
| SRR924147 | suspension cells EX ORCA2 CK | 6.93614 | |
| SRR924148 | suspension cells EX ORCA3 CK | 6.346375 |