miRNA detailed information
miRNA detail image
Location informaition
| Type | ID | Scaffold | Start | End | Strand |
|---|
| mature | cro-novel-49 | scaffold_3070158 | 15748 | 15771 | + |
| precursor | cro-NOVEL-49 | scaffold_3070158 | 15734 | 15931 | + |
Sequence and structure information
Mature sequence[cro-novel-49] CGGAUCCUCUGUAAUAUUUACUGU |
Stem-loop sequence[cro-NOVEL-49] CUUUUAAGGCGGUUCGGAUCCUCUGUAAUAUUUACUGUACAUUCUUUAUAAUAUUUCUAAUUUGAUAUAUUUUAUUAAAAGACUUAUUAAAUAAAAGAUAAACCUUAAGAAAAAUUGGUAAACUCAAAGGGGAAAAAAUGUAUUAUAAAAAGAAAUGUUACAGGAGAUGUCACAGAGGAUCCUGAGUGGUUUUAAGGU |
Secondary structure of stem-loop sequence 
To make high resolution picture for your own, please download the .ps file. |
miRNA target information
| Target gene | Alignment | Annotation | Expection | Method |
|---|
| CRO_T006873 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | =*=**||||=|||||||||||||* | | | | targets: | 686 | GAGAAAAAUGUUACAGAGGAUCCU | 709 |
| hypothetical protein | 2 | psRNATarget[Detail] | | CRO_T008146 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | |||--||||=|||||*|||||||| | | | | targets: | 1398 | ACA--AAAUGUUACAAAGGAUCCG | 1419 |
| PPPDE putative thiol peptidase family protein | 2.5 | psRNATarget[Detail] | | CRO_T011669 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | ||=|*|*||=|||||||||||||* | | | | targets: | 3261 | ACGGAAUAUGUUACAGAGGAUCCU | 3284 |
| BEL1-like homeodomain | 3 | psRNATarget[Detail] | | CRO_T012592 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | ||=|*||||=|||||||*|||||| | | | | targets: | 5187 | ACGGGAAAUGUUACAGAUGAUCCG | 5210 |
| hypothetical protein | 2.5 | psRNATarget[Detail] | | CRO_T016538 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | |||--|||||||||||||||||=| | | | | targets: | 2361 | ACA--AAAUAUUACAGAGGAUCUG | 2382 |
| smr (Small MutS Related) domain-containing protein | 1.5 | psRNATarget[Detail] | | CRO_T024735 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | |||--||=||*||||||||||||* | | | | targets: | 5282 | ACA--AAGUAGUACAGAGGAUCCU | 5303 |
| hypothetical protein | 3 | psRNATarget[Detail] | | CRO_T026111 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | |=|**||||=|||||||*|||||| | | | | targets: | 9173 | AUAAAAAAUGUUACAGACGAUCCG | 9196 |
| DUF4079 domain containing protein | 2.5 | psRNATarget[Detail] | | CRO_T026146 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | |=||*||||=|||||||*|||||| | | | | targets: | 1356 | AUAGGAAAUGUUACAGAAGAUCCG | 1379 |
| Cellulase (glycosyl hydrolase family 5) protein | 2.5 | psRNATarget[Detail] | | CRO_T028269 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | |==--||||=|||||*|||||||| | | | | targets: | 2222 | AUG--AAAUGUUACAAAGGAUCCG | 2243 |
| Carbohydrate-binding X8 domain superfamily protein | 2.5 | psRNATarget[Detail] | | CRO_T030975 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | |=|**=|||||||||*|||||||| | | | | targets: | 7057 | AUAAAGAAUAUUACAUAGGAUCCG | 7080 |
| AP-5 complex subunit, vesicle trafficking domain containing protein | 2.5 | psRNATarget[Detail] | | CRO_T031150 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | |||**||||||||||||||||||| | | | | targets: | 2406 | ACAUAAAAUAUUACAGAGGAUCCG | 2429 |
| Nodulin MtN3 family protein | 0 | psRNATarget[Detail] | | CRO_T032280 | | | ncRNA: | 24 | UGUCAUUUAUAAUGUCUCCUAGGC | 1 | | | | | |*||*||||=|||||||*|||||| | | | | targets: | 2653 | AAAGGAAAUGUUACAGAAGAUCCG | 2676 |
| MATE efflux family protein | 2.5 | psRNATarget[Detail] |
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Expression pattern
| Tissue | Treat | FPKM value |
|---|
| seedling | control | 31.68 |
| seedling | MeJA treatment 1h | 24.79 |
| seedling | MeJA treatment 8h | 31.18 |
| seedling | MeJA treatment 24h | 26.72 |