CRO_T026111's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T026111 | DUF4079 domain containing protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G36885 | 3.00E-65 | unknown protein |
| Arabidopsis thaliana | AT2G36885 | 3.00E-65 | unknown protein |
| Arabidopsis thaliana | AT5G03420 | 4.00E-20 | 5'-AMP-activated protein kinase-related |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | cro-novel-149 cro-novel-49 cro-novel-155 | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000930 | formation of glycosidic bonds, GlycosylTransferases: GTnc alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity uroporphyrinogen decarboxylase activity protoporphyrinogen IX biosynthetic process respiratory electron transport chain plastid translation trehalose biosynthetic process 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) chloroplast stroma Porphyrin and chlorophyll metabolism | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T026111 | scaffolds.min_1000bp | scaffold_3065660 | 88429 | 98629 | + |
Gene detail image
| Genome: |
| CRO_T026111 |
| CDS: |
| CRO_T026111 |
| Transcript: |
| CRO_T026111 |
| Protein: |
| CRO_T026111 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0022904 | respiratory electron transport chain | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13301.3 | DUF4079 | 837 | 967 | 3.7e-21 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 15.87425 | |
| SRR122236 | mixed tissue RA CK | 5.659545 | |
| SRR122237 | mixed tissue RB CK | 6.227425 | |
| SRR122250 | callus YE 0.3mg/ml CK | 7.68454 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 11.6379 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 8.36897 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 8.62071 | |
| SRR122242 | callus MeJA 100um 0h | 6.64949 | |
| SRR122246 | callus MeJA 100um 6h | 11.2843 | |
| SRR122240 | callus MeJA 100um 12h | 10.2534 | |
| SRR122241 | callus MeJA 100um 24h | 5.69855 | |
| SRR122239 | flower CK 1 | 6.25725 | |
| SRR1271859 | flower CK 2 | 5.881015 | |
| SRR1144633 | healthy flowers CK | 6.433615 | |
| SRR1144634 | flowers PnWB infected | 10.40479 | |
| SRR122257 | hairy root CK | 3.85961 | |
| SRR122258 | hairy root MeJA 250um CK | 3.61265 | |
| SRR122259 | hairy root MeJA 250um 24h | 3.95034 | |
| SRR122256 | hairy root RebH F CK | 4.45395 | |
| SRR122255 | hairy root TDCi CK | 4.47594 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 3.61314 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 3.65771 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 4.45995 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 5.26367 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 4.80634 | |
| SRR1820238 | Hairy roots CK GUS 3 | 4.18034 | |
| SRR1820233 | Hairy roots CK GUS 4 | 4.71823 | |
| SRR1820326 | Hairy roots CK GUS 5 | 6.090215 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 1.65593 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 2.91314 | |
| SRR122252 | immature leaf CK | 15.2562 | |
| SRR342023 | leaf CK 1 | 37.91575 | |
| SRR342022 | leaf CK 2 | 16.418 | |
| SRR342019 | leaf CK 3 | 26.58405 | |
| SRR342017 | leaf CK 4 | 29.2796 | |
| SRR1271857 | leaf CK 5 | 24.5877 | |
| SRR122251 | mature leaf CK | 11.3242 | |
| SRR648705 | root CK 1 | 3.87571 | |
| SRR1271858 | root CK 2 | 3.387565 | |
| SRR122254 | root CK 3 | 8.31393 | |
| SRR648707 | root MeJA 24h | 2.96883 | |
| SRR648709 | root MeJA 24h DSN normalized | 2.74079 | |
| SRR837772 | seedling CK | 4.150335 | |
| SRR122243 | sterile seedlings AE CK 1 | 15.6895 | |
| SRR122245 | sterile seedlings AE CK 2 | 16.815 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 11.6245 | |
| SRR122253 | stem CK | 4.42175 | |
| SRR646572 | shoots CK | 8.78133 | |
| SRR647068 | shoots MeJA 6h 1 | 10.55872 | |
| SRR646596 | shoots MeJA 6h 2 | 10.34215 | |
| SRR646604 | shoots MeJA 24h | 6.059585 | |
| SRR924147 | suspension cells EX ORCA2 CK | 3.24244 | |
| SRR924148 | suspension cells EX ORCA3 CK | 3.776945 |