CFinderADM001180's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyrimidine deoxyribonucleotides de novo biosynthesis I | 1.74E-06 | plantCyc |
| dUDP biosynthetic process | 0.000289313 | GO:0006227 |
| dTTP biosynthetic process | 0.000289313 | GO:0006235 |
| dTDP biosynthetic process | 0.000289313 | GO:0006233 |
| branched-chain amino acid catabolic process | 0.000289313 | GO:0009083 |
| isovaleryl-CoA dehydrogenase activity | 0.000366187 | GO:0008470 |
| thymidylate kinase activity | 0.000366187 | GO:0004798 |
| oxidoreductase activity, acting on a sulfur group of donors | 0.000366187 | GO:0016667 |
| argininosuccinate metabolic process | 0.000462501 | GO:0000053 |
| argininosuccinate synthase activity | 0.000548805 | GO:0004055 |
| inositol hexakisphosphate binding | 0.000731106 | GO:0000822 |
| tRNA methyltransferase activity | 0.000913091 | GO:0008175 |
| Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family | 0.001131955 | kinase family |
| leucine catabolic process | 0.001153251 | GO:0006552 |
| urea cycle | 0.001153251 | plantCyc |
| L-arginine biosynthesis I (via L-ornithine) | 0.001360032 | plantCyc |
| uridylate kinase activity | 0.001458418 | GO:0009041 |
| pyrimidine deoxyribonucleotides de novo biosynthesis II | 0.001598736 | plantCyc |
| rRNA methyltransferase activity | 0.0016393 | GO:0008649 |
| L-arginine biosynthesis II (acetyl cycle) | 0.001689769 | plantCyc |
| L-leucine degradation I | 0.001689769 | plantCyc |
| pyrimidine deoxyribonucleotide phosphorylation | 0.001689769 | plantCyc |
| superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) | 0.001689769 | plantCyc |
| rRNA base methylation | 0.001725389 | GO:0070475 |
| lipid homeostasis | 0.001725389 | GO:0055088 |
| fatty acid beta-oxidation using acyl-CoA dehydrogenase | 0.001725389 | GO:0033539 |
| oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor | 0.001819868 | GO:0052890 |
| plant-type hypersensitive response | 0.001915439 | GO:0009626 |
| fatty-acyl-CoA binding | 0.002831631 | GO:0000062 |
| glucan endo-1,3-beta-D-glucosidase activity | 0.003459289 | GO:0042973 |
| Valine, leucine and isoleucine degradation | 0.003669848 | KEGG pathway |
| zinc ion binding | 0.004034527 | GO:0008270 |
| transcription coactivator activity | 0.004034527 | GO:0003713 |
| Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX | 0.004384149 | kinase family |
| L-valine degradation I | 0.004662637 | plantCyc |
| tRNA methylation | 0.004854869 | GO:0030488 |
| arginine biosynthetic process | 0.005004312 | GO:0006526 |
| iron-sulfur cluster binding | 0.007089082 | GO:0051536 |
| transcription from RNA polymerase II promoter | 0.008110192 | GO:0006366 |
| pyrimidine ribonucleotides interconversion | 0.012701715 | plantCyc |
| vindoline and vinblastine biosynthesis | 0.014345008 | plantCyc |
| positive regulation of transcription, DNA-templated | 0.016824479 | GO:0045893 |
| auxin-activated signaling pathway | 0.016824479 | GO:0009734 |
| metalloendopeptidase activity | 0.017745761 | GO:0004222 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.020706383 | cazy family |
| Transcription_related, Transcription factor: MYB-related | 0.020706383 | TF family |
| Ubiquitin_Proteasome_system, E3: RING | 0.020706383 | ubs family |
| single-organism metabolic process | 0.022285976 | GO:0044710 |
| protein serine/threonine phosphatase activity | 0.023271259 | GO:0004722 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.024401423 | cazy family |
| Pyrimidine metabolism | 0.025117759 | KEGG pathway |
| cell | 0.04282995 | GO:0005623 |
| mitochondrial matrix | 0.04282995 | GO:0005759 |
| Transcription_related, Transcription factor: bHLH | 0.043968308 | TF family |
| protein dephosphorylation | 0.049995921 | GO:0006470 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000602 | AT3G19630 (8.00E-160) | Radical SAM superfamily protein |
| CRO_T001182 | AT3G45300 (1.00E-172) | IVD|isovaleryl-CoA-dehydrogenase |
| CRO_T004303 | AT5G66160 (4.00E-16) | ATRMR1|RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1 |
| CRO_T007068 | AT5G16820 (3.00E-66) | ATHSF3|ARABIDOPSIS HEAT SHOCK FACTOR 3; ATHSFA1B|CLASS A HEAT SHOCK FACTOR 1B; HSF3|heat shock factor 3 |
| CRO_T007159 | AT4G24830 (3.00E-118) | arginosuccinate synthase family |
| CRO_T008772 | AT2G36690 (6.00E-46) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T010651 | AT3G47610 (9.00E-110) | transcription regulators; zinc ion binding |
| CRO_T010853 | AT1G12820 (0) | AFB3|auxin signaling F-box 3 |
| CRO_T012147 | AT5G59440 (9.00E-86) | ATTMPK.1|THYMIDYLATE KINASE.1; ATTMPK.2|THYMIDYLATE KINASE.2; ZEU1|ZEUS1 |
| CRO_T012391 | AT1G29840 (2.00E-55) | alpha/beta-Hydrolases superfamily protein |
| CRO_T013907 | AT1G14230 (7.00E-136) | GDA1/CD39 nucleoside phosphatase family protein |
| CRO_T020207 | AT4G39160 (2.00E-42) | Homeodomain-like superfamily protein |
| CRO_T021641 | AT2G45910 (6.00E-152) | U-box domain-containing protein kinase family protein |
| CRO_T022331 | AT3G60300 (2.00E-76) | RWD domain-containing protein |
| CRO_T022927 | AT4G31750 (2.00E-26) | WIN2|HOPW1-1-interacting 2 |
| CRO_T023944 | AT5G06390 (2.00E-155) | FLA17|FASCICLIN-like arabinogalactan protein 17 precursor |
| CRO_T024284 | AT1G77220 (0) | Protein of unknown function (DUF300) |
| CRO_T027193 | AT1G55680 (3.00E-101) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T027822 | AT3G53570 (4.00E-138) | AFC1|FUS3-complementing gene 1 |
| CRO_T029698 | - | - |
| CRO_T031063 | - | - |
| CRO_T031860 | AT1G11820 (7.00E-170) | O-Glycosyl hydrolases family 17 protein |
| CRO_T033633 | AT4G20310 (3.00E-07) | Peptidase M50 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000077 | dTTP biosynthetic process autophagic cell death dTDP biosynthetic process branched-chain amino acid catabolic process dUDP biosynthetic process phosphatidylinositol-3,5-bisphosphate binding isovaleryl-CoA dehydrogenase activity growth factor activity thymidylate kinase activity protein lipidation phosphatidylinositol-3-phosphate binding protein localization to pre-autophagosomal structure mitophagy leucine catabolic process myo-inositol:proton symporter activity uridylate kinase activity nucleophagy myo-inositol transport Valine, leucine and isoleucine degradation leaf senescence lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor plant-type hypersensitive response cell proliferation pre-autophagosomal structure membrane extracellular region L-leucine degradation I pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) response to starvation fatty-acyl-CoA binding chitin binding pyrimidine deoxyribonucleotides de novo biosynthesis I Circadian rhythm - plant cytokinin-O-glucosides biosynthesis L-valine degradation I chitin catabolic process chitinase activity Pyrimidine metabolism glucose transmembrane transport Transcription_related, Transcription factor: Orphans phosphorelay signal transduction system glucose import response to water deprivation glucose transmembrane transporter activity extrinsic component of membrane sugar:proton symporter activity proton transport mitochondrial matrix quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity flavonoid glucuronidation flavonoid biosynthetic process electron carrier activity flavin adenine dinucleotide binding transporter activity cytosol | details |
| CFinderADM000438 | reactive oxygen species metabolic process thymidylate kinase activity 1-phosphatidylinositol-3-kinase activity response to extracellular stimulus dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process organ morphogenesis microgametogenesis regulation of root development phosphatidylinositol-3-phosphate biosynthetic process phosphatidylinositol 3-kinase complex lateral root development tau-protein kinase activity endoplasmic reticulum unfolded protein response fruit development phosphatidylinositol-mediated signaling uridylate kinase activity defense response to fungus, incompatible interaction heterotrimeric G-protein complex pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I negative regulation of abscisic acid-activated signaling pathway cullin-RING ubiquitin ligase complex Cul4-RING E3 ubiquitin ligase complex motor activity histone acetyltransferase activity myosin complex Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Ubiquitin_Proteasome_system, E3 adaptor: Cullin histone acetylation Transcription_related, Transcription regulator: mTERF phosphatidylinositol phosphorylation Endocytosis jasmonic acid mediated signaling pathway 3-phosphoinositide biosynthesis response to ethylene Ras signaling pathway ubiquitin protein ligase binding actin binding Pyrimidine metabolism Inositol phosphate metabolism response to salt stress protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD Protein processing in endoplasmic reticulum ATP binding endoplasmic reticulum intracellular | details |
| CFinderADM000476 | dTTP biosynthetic process dTDP biosynthetic process response to extracellular stimulus branched-chain amino acid catabolic process dUDP biosynthetic process isovaleryl-CoA dehydrogenase activity aldehyde-lyase activity thymidylate kinase activity organ morphogenesis seed coat development regulation of root development reactive oxygen species metabolic process arabinan catabolic process lateral root development leucine catabolic process endoplasmic reticulum unfolded protein response fruit development xylan catabolic process defense response to fungus, incompatible interaction xylan 1,4-beta-xylosidase activity lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase plant-type hypersensitive response phosphogluconate dehydrogenase (decarboxylating) activity uridylate kinase activity Tyrosine metabolism Valine, leucine and isoleucine degradation alpha-L-arabinofuranosidase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway fatty-acyl-CoA binding L-leucine degradation I L-phenylalanine biosynthesis III (cytosolic, plants) plastoquinol-9 biosynthesis I pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) vitamin E biosynthesis (tocopherols) Ras signaling pathway histone acetylation histone acetyltransferase activity Cul4-RING E3 ubiquitin ligase complex pyrimidine deoxyribonucleotides de novo biosynthesis I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: mTERF Pyrimidine metabolism jasmonic acid mediated signaling pathway L-valine degradation I response to ethylene sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle glycolysis IV (plant cytosol) gluconeogenesis I glycolysis I (from glucose 6-phosphate) lyase activity mitochondrial matrix NAD binding electron carrier activity flavin adenine dinucleotide binding transporter activity apoplast plant-type cell wall Ubiquitin_Proteasome_system, E3 adaptor: DWD transport endoplasmic reticulum carbohydrate metabolic process | details |
| CFinderADM000509 | Valine, leucine and isoleucine degradation isovaleryl-CoA dehydrogenase activity branched-chain amino acid catabolic process leucine catabolic process plant-type hypersensitive response fatty acid beta-oxidation using acyl-CoA dehydrogenase lipid homeostasis L-leucine degradation I oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor fatty-acyl-CoA binding L-valine degradation I mitochondrial matrix electron carrier activity flavin adenine dinucleotide binding transporter activity transport transmembrane transport integral component of membrane | details |
| CFinderADM000518 | dTTP biosynthetic process dUDP biosynthetic process dTDP biosynthetic process Protein_kinases_phosphatases, PPC:1.6.4: RKF3 Like Kinase L-tyrosine:2-oxoglutarate aminotransferase activity thymidylate kinase activity mature ribosome assembly formation of glycosidic bonds, GlycosylTransferases: GTnc uridylate kinase activity trehalose biosynthetic process L-isoleucine degradation I L-leucine degradation I L-phenylalanine biosynthesis III (cytosolic, plants) pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) xyloglucan biosynthesis L-phenylalanine:2-oxoglutarate aminotransferase activity 2-oxoisovalerate decarboxylation to isobutanoyl-CoA pyrimidine deoxyribonucleotides de novo biosynthesis I Propanoate metabolism cellular amino acid metabolic process CDP-diacylglycerol biosynthesis I L-valine degradation I translational elongation biosynthetic process diacylglycerol and triacylglycerol biosynthesis translation elongation factor activity Pyrimidine metabolism benzoate biosynthesis I (CoA-dependent, β-oxidative) transferase activity, transferring acyl groups other than amino-acyl groups transferase activity, transferring acyl groups Glycerolipid metabolism Biosynthesis of amino acids Ribosome biogenesis in eukaryotes intracellular protein transport GTPase activity pyridoxal phosphate binding Starch and sucrose metabolism | details |
| CFinderADM000703 | argininosuccinate synthase activity argininosuccinate metabolic process urea cycle arginine biosynthetic process Biosynthesis of amino acids L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) cytoplasm protein serine/threonine phosphatase activity protein dephosphorylation ATP binding Ubiquitin_Proteasome_system, E3 adaptor: F-box Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM000745 | nucleoside metabolic process dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process catalytic activity thymidylate kinase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc uridylate kinase activity sucrose metabolic process sucrose alpha-glucosidase activity pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I cytokinin-O-glucosides biosynthesis Galactose metabolism Pyrimidine metabolism flavonoid biosynthetic process flavonoid glucuronidation quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc vacuole intracellular membrane-bounded organelle | details |
| CFinderADM000775 | metalloendopeptidase activity small GTPase mediated signal transduction Protein processing in endoplasmic reticulum intracellular GTP binding proteolysis Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM000827 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process L-lysine catabolic process thymidylate kinase activity saccharopine dehydrogenase (NADP+, L-lysine-forming) activity UDP-glycosyltransferase activity uridylate kinase activity anthocyanin biosynthesis anthocyanin biosynthesis (pelargonidin 3-O-glucoside) proanthocyanidins biosynthesis from flavanols pyrimidine deoxyribonucleotides de novo biosynthesis II pyrimidine deoxyribonucleotide phosphorylation superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) crocetin esters biosynthesis pinobanksin biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I ethylene biosynthesis I (plants) Lysine degradation Pyrimidine metabolism leucodelphinidin biosynthesis transferase activity, transferring hexosyl groups Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) cytosol flavonoid glucuronidation flavonoid biosynthetic process dioxygenase activity oxidation-reduction process formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular membrane-bounded organelle | details |
| CFinderADM000833 | thymidylate kinase activity 1-phosphatidylinositol-3-kinase activity phosphatidylinositol 3-kinase complex dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process microgametogenesis phosphatidylinositol-3-phosphate biosynthetic process endomembrane system organization reactive oxygen species metabolic process organelle organization phosphatidylinositol-mediated signaling uridylate kinase activity pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I ribonucleoside binding biological regulation COPII vesicle coat RNA polymerase III activity DNA-directed RNA polymerase III complex zinc ion binding phosphatidylinositol phosphorylation Endocytosis 3-phosphoinositide biosynthesis ER to Golgi vesicle-mediated transport response to salt stress single-organism cellular process Inositol phosphate metabolism Pyrimidine metabolism Transcription_related, Transcription regulator: SNF2 intracellular protein transport Purine metabolism Protein processing in endoplasmic reticulum Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular transcription, DNA-templated Ubiquitin_Proteasome_system, E3: RING DNA binding | details |
| CFinderADM000868 | double-stranded telomeric DNA binding telomeric loop formation nuclear chromosome, telomeric region Circadian rhythm - plant nucleosome assembly nucleosome Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription factor: Orphans aspartic-type endopeptidase activity phosphorelay signal transduction system lipid metabolic process MAPK signaling pathway - plant intracellular proteolysis | details |
| CFinderADM001060 | growth factor activity myo-inositol:proton symporter activity myo-inositol transport cell proliferation pyrimidine deoxyribonucleotides de novo biosynthesis I protein-cysteine S-palmitoyltransferase activity pyrimidine ribonucleotides interconversion Ubiquitin_Proteasome_system, E3 adaptor: BTB glucose transmembrane transport sugar:proton symporter activity glucose transmembrane transporter activity glucose import proton transport Purine metabolism membrane integral component of plasma membrane extracellular region | details |
| CFinderADM001075 | Transcription_related, Transcription factor: Alfin-like trans-cinnamoyl-CoA biosynthesis 4-hydroxybenzoate biosynthesis I (eukaryotes) umbelliferone biosynthesis Ubiquitin_Proteasome_system, DUB: OTU Flavonoid biosynthesis histone binding vindoline and vinblastine biosynthesis Phenylpropanoid biosynthesis dioxygenase activity ligase activity metabolic process | details |
| CFinderADM001088 | argininosuccinate synthase activity argininosuccinate metabolic process urea cycle arginine biosynthetic process Biosynthesis of amino acids L-arginine biosynthesis I (via L-ornithine) vesicle fusion with Golgi apparatus Golgi to vacuole transport Transcription_related, Transcription factor: EIL L-arginine biosynthesis II (acetyl cycle) vacuolar transport retrograde transport, endosome to Golgi protein targeting to vacuole intra-Golgi vesicle-mediated transport ER to Golgi transport vesicle membrane late endosome membrane ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding Transcription_related, Transcription factor: C3H cytoplasm SNARE complex Endocytosis MAPK signaling pathway - plant endoplasmic reticulum membrane Ubiquitin_Proteasome_system, E3 adaptor: DWD ATP binding Golgi apparatus intracellular transcription factor activity, sequence-specific DNA binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001179 | molybdopterin synthase complex carbohydrate metabolic process Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-galactosidase activity glucan endo-1,3-beta-D-glucosidase activity Galactose metabolism metalloendopeptidase activity 4 iron, 4 sulfur cluster binding zinc ion binding metal ion binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: FAR1 Starch and sucrose metabolism Protein processing in endoplasmic reticulum proteolysis catalytic activity nucleic acid binding mitochondrion regulation of transcription, DNA-templated | details |
| CFinderADM001266 | dTDP biosynthetic process dUDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity oxidoreductase activity, acting on a sulfur group of donors Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII uridylate kinase activity anthocyanin biosynthesis anthocyanin biosynthesis (pelargonidin 3-O-glucoside) proanthocyanidins biosynthesis from flavanols pyrimidine deoxyribonucleotides de novo biosynthesis II pyrimidine deoxyribonucleotide phosphorylation superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pinobanksin biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I ethylene biosynthesis I (plants) leucodelphinidin biosynthesis Pyrimidine metabolism Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) Plant-pathogen interaction protein catabolic process cell benzoate biosynthesis I (CoA-dependent, β-oxidative) aspartic-type endopeptidase activity single-organism metabolic process lipid metabolic process cellular process dioxygenase activity proteolysis | details |
| CFinderADM001267 | dTDP biosynthetic process dTTP biosynthetic process dUDP biosynthetic process branched-chain amino acid catabolic process oxidoreductase activity, acting on a sulfur group of donors isovaleryl-CoA dehydrogenase activity thymidylate kinase activity Valine, leucine and isoleucine degradation leucine catabolic process lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase plant-type hypersensitive response uridylate kinase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor fatty-acyl-CoA binding anthocyanin biosynthesis anthocyanin biosynthesis (pelargonidin 3-O-glucoside) proanthocyanidins biosynthesis from flavanols pyrimidine deoxyribonucleotides de novo biosynthesis II L-leucine degradation I pyrimidine deoxyribonucleotide phosphorylation superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pinobanksin biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I ethylene biosynthesis I (plants) Pyrimidine metabolism leucodelphinidin biosynthesis L-valine degradation I Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) single-organism metabolic process cell mitochondrial matrix cellular process dioxygenase activity electron carrier activity flavin adenine dinucleotide binding transporter activity transport Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001268 | argininosuccinate synthase activity argininosuccinate metabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) nuclear lumen L-arginine biosynthesis II (acetyl cycle) arginine biosynthetic process Biosynthesis of amino acids Ubiquitin_Proteasome_system, E3 adaptor: F-box Ubiquitin_Proteasome_system, E3: RING cytoplasm | details |
| CFinderADM001280 | TFIIK complex cyclin-dependent protein kinase holoenzyme complex response to abiotic stimulus positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of cyclin-dependent protein serine/threonine kinase activity cyclin-dependent protein serine/threonine kinase regulator activity positive regulation of transcription from RNA polymerase II promoter calcium ion transmembrane transport calcium-transporting ATPase activity Basal transcription factors integral component of plasma membrane intracellular membrane-bounded organelle Ubiquitin_Proteasome_system, E3: RING transcription, DNA-templated | details |
| CFinderADM001392 | argininosuccinate metabolic process argininosuccinate synthase activity urea cycle arginine biosynthetic process Biosynthesis of amino acids L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) plasma membrane cytoplasm protein dephosphorylation protein serine/threonine phosphatase activity ATP binding Ubiquitin_Proteasome_system, E3: RING integral component of membrane | details |
| CFinderADM001400 | Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase inositol hexakisphosphate binding triacylglycerol degradation auxin-activated signaling pathway lipid metabolic process Plant hormone signal transduction 2-alkenal reductase [NAD(P)] activity Ubiquitin_Proteasome_system, E3 adaptor: F-box protein kinase activity RNA binding integral component of membrane | details |
| CFinderADM001465 | tRNA methyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc rRNA base methylation rRNA methyltransferase activity tRNA methylation pyrimidine deoxyribonucleotides de novo biosynthesis I iron-sulfur cluster binding beta-galactosidase activity pyrimidine ribonucleotides interconversion Galactose metabolism Purine metabolism carbohydrate metabolic process nucleic acid binding | details |
| CFinderADM001471 | aging shoot system development reproductive structure development single organism reproductive process pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion Transcription_related, Transcription factor: NAC Purine metabolism transmembrane transport transcription, DNA-templated DNA binding regulation of transcription, DNA-templated | details |
| CFinderADM001500 | glycerophosphodiester phosphodiesterase activity RNA modification lipid metabolic process hydrolase activity chloroplast integral component of membrane | details |
| CFinderADM001696 | dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process thymidylate kinase activity Vasopressin-regulated water reabsorption tau-protein kinase activity uridylate kinase activity Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) motor activity pyrimidine deoxyribonucleotides de novo biosynthesis I dynein complex microtubule-based process myosin complex Pyrimidine metabolism actin binding ATP binding protein phosphorylation | details |
| CFinderADM001697 | dUDP biosynthetic process dTDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) uridylate kinase activity pyrimidine deoxyribonucleotides de novo biosynthesis I protein-cysteine S-palmitoyltransferase activity glucan endo-1,3-beta-D-glucosidase activity motor activity zinc ion binding myosin complex Pyrimidine metabolism actin binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: M-type Starch and sucrose metabolism carbohydrate metabolic process binding | details |
| CFinderADM001810 | small GTPase mediated signal transduction intracellular GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001831 | Vasopressin-regulated water reabsorption Rho GDP-dissociation inhibitor activity double-stranded telomeric DNA binding telomeric loop formation Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I nuclear chromosome, telomeric region MAP kinase kinase kinase activity nucleosome assembly activation of MAPKK activity regulation of catalytic activity MAPK cascade nucleosome Transcription_related, Transcription factor: MYB-related adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 intracellular Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001834 | inositol hexakisphosphate binding Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII Phagosome microtubule-based process structural constituent of cytoskeleton auxin-activated signaling pathway Transcription_related, Transcription factor: C3H microtubule Plant-pathogen interaction GTPase activity Plant hormone signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box GTP binding protein phosphorylation protein serine/threonine kinase activity | details |
| CFinderADM001913 | carbohydrate metabolic process dynein complex Vasopressin-regulated water reabsorption microtubule-based process glucan endo-1,3-beta-D-glucosidase activity polygalacturonase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc helicase activity RNA degradation cell wall organization extracellular region Starch and sucrose metabolism Ubiquitin_Proteasome_system, E3: U-box Ubiquitin_Proteasome_system, E3: RING nucleic acid binding | details |
| CFinderADM002098 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family glucan endo-1,3-beta-D-glucosidase activity leucodelphinidin biosynthesis pinobanksin biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) single-organism metabolic process Starch and sucrose metabolism Ubiquitin_Proteasome_system, E3: U-box Ubiquitin_Proteasome_system, E3: RING protein kinase activity carbohydrate metabolic process oxidoreductase activity protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |