Solyc02g068080.2's detail annotation
Phytozome annotation
| chloride channel B | ||
Network
| Network Category | Global Network | Tissue Preferential Network | Stress differential network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist | Top300 PCC genelist |
| PPI relationship | Solyc08g077810.1 Solyc03g007120.2 Solyc11g005640.1 Solyc09g008410.2 Solyc10g083930.1 Solyc03g112770.2 Solyc04g009800.2 Solyc10g081740.1 | ||
| miRNA-target relationship | null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000361 | cation transmembrane transporter activity voltage-gated chloride channel activity transmembrane transport chloride transport isoprenoid biosynthetic process cation transport geranylgeranyl diphosphate biosynthesis superpathway of phylloquinol biosynthesis superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I Chemical_carcinogenesis Terpenoid_backbone_biosynthesis | global network |
Location information
| Gene | Assembly | Sources | Chr | Start | End | Strand |
|---|---|---|---|---|---|---|
| Solyc02g068080.2 | SL2.40 | phytozomev10 | SL2.40ch02 | 32703505 | 32707626 | - |
Gene structure and chromatin state
| more details in UCSC | details of chromatin state |
Sequences
| Gene: |
| >Solyc02g068080.2 |
| Transcript: |
| Solyc02g068080.2.1 |
| CDS: |
| Solyc02g068080.2.1 |
| Protein: |
| Solyc02g068080.2.1 |
Top hits annotation
| Species | Top Hits | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G40890 | 0 | chloride channel A |
| Nicotiana tabacum | gene_26925 | 0 | Voltage-gated chloride channel |
| Nicotiana tabacum | gene_83696 | 0 | Voltage-gated chloride channel |
| Nicotiana tabacum | gene_25216 | 0 | Voltage-gated chloride channel |
| Nicotiana tabacum | gene_80271 | 0 | Voltage-gated chloride channel |
| Nicotiana tabacum | gene_26901 | 0 | Voltage-gated chloride channel |
| Nicotiana tabacum | gene_81744 | 0 | Voltage-gated chloride channel |
| Nicotiana benthamiana(v0.44) | NbS00000822g0009.1 | 0 | Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH) |
| Nicotiana benthamiana(v0.44) | NbS00014291g0005.1 | 0 | Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH) |
| Solanum tuberosum | PGSC0003DMP400012364 | 0 | Gene of unknown function |
| Capsicum annuum | Capang02g000948 | 0 | |
| Capsicum annuum | Capana02g001031 | 0 | |
| Capsicum annuum | Capana02g003635 | 0 | |
| Capsicum annuum | CA02g09140 | 0 | CLC-Nt2 protein |
| Capsicum annuum | CA02g30730 | 0 | CLC-Nt2 protein |
| Nicotiana benthamiana(v1.01) | Niben101Scf03766g02001.1 | 0 | Chloride channel protein CLC-b |
| Solanum pennellii | Sopen02g017190.1 | 0 | Voltage gated chloride channel |
| Solanum pennellii | Sopen02g038700.1 | 0 | Voltage gated chloride channel |
| Petunia axillaris | Peaxi162Scf00881g00239.1 | 0 | chloride channel B |
| Petunia axillaris | Peaxi162Scf00692g00522.1 | 0 | Blue copper protein [Morus notabilis] |
| Petunia axillaris | Peaxi162Scf00420g00565.1 | 0 | chloride channel B |
| Petunia inflata | Peinf101Scf01393g02011.1 | 0 | chloride channel B |
| Petunia inflata | Peinf101Scf01192g05049.1 | 0 | chloride channel B |
Gene family
| Gene family | Subfamily |
|---|---|
| - | - |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| - | - | - | - | - |
PlantCyC
| Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|
| - | - | - | - |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005515 | protein binding | molecular_function |
| GO:0005247 | voltage-gated chloride channel activity | molecular_function |
| GO:0006821 | chloride transport | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0016020 | membrane | cellular_component |
Pfam Domain
| Pfam accession | Pfam name | Alignment start | Alignment end |
|---|---|---|---|
| PF00654.16 | Voltage_CLC | 145 | 560 |
| PF00571.24 | CBS | 714 | 764 |