Solyc04g012040.2's detail annotation
Phytozome annotation
| 26S proteasome regulatory subunit, putative (RPN5) |
Network
Functional module
| Module ID | Function Annotation | Category |
|---|
| CFinderADM000641 | proteolysis involved in cellular protein catabolic process
proteasome core complex
threonine-type endopeptidase activity
proteasome core complex, alpha-subunit complex
endopeptidase activity
ubiquitin-dependent protein catabolic process
Proteasome
| global network |
Location information
| Gene | Assembly | Sources | Chr | Start | End | Strand |
|---|
| Solyc04g012040.2 | SL2.40 | phytozomev10 | SL2.40ch04 | 4367412 | 4375553 | + |
Gene structure and chromatin state
Sequences
Top hits annotation
| Species | Top Hits | E-value | Annotation |
|---|
| Arabidopsis thaliana | AT5G09900 | 0 | EMBRYO DEFECTIVE 2107 |
| Arabidopsis thaliana | AT5G64760 | 0 | regulatory particle non-ATPase subunit 5B |
| Nicotiana tabacum | gene_29990 | 0 | 26S proteasome non-ATPase regulatory subunit 12 |
| Nicotiana tabacum | gene_55742 | 3.00E-97 | 26S proteasome non-ATPase regulatory subunit 12 |
| Nicotiana tabacum | gene_41620 | 0 | 26S proteasome non-ATPase regulatory subunit 12 |
| Nicotiana tabacum | gene_82502 | 0 | 26S proteasome non-ATPase regulatory subunit 12 |
| Nicotiana tabacum | gene_36553 | 0 | 26S proteasome non-ATPase regulatory subunit 12 |
| Nicotiana tabacum | gene_49035 | 0 | 26S proteasome non-ATPase regulatory subunit 12 |
| Nicotiana benthamiana(v0.44) | NbS00043764g0009.1 | 3.00E-150 | 26S proteasome non-ATPase regulatory subunit 12 (AHRD V1 ***- B5X386_SALSA) |
| Solanum tuberosum | PGSC0003DMP400040907 | 0 | Gene of unknown function |
| Capsicum annuum | Capang05g000264 | 0 | |
| Capsicum annuum | Capang12g001530 | 0 | |
| Capsicum annuum | Capana00g001932 | 0 | |
| Capsicum annuum | Capana12g001880 | 0 | |
| Capsicum annuum | CA05g02580 | 0 | PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Solanum lycopersicum] |
| Nicotiana benthamiana(v1.01) | Niben101Scf10438g00008.1 | 0 | 26S proteasome non-ATPase regulatory subunit 12 homolog A |
| Nicotiana benthamiana(v1.01) | Niben101Scf02242g03013.1 | 0 | 26S proteasome non-ATPase regulatory subunit 12 homolog A |
| Nicotiana benthamiana(v1.01) | Niben101Scf11706g00008.1 | 0 | 26S proteasome non-ATPase regulatory subunit 12 homolog A |
| Solanum pennellii | Sopen04g006160.1 | 0 | PCI domain |
| Solanum pennellii | Sopen04g022780.1 | 0 | PCI domain |
| Petunia axillaris | Peaxi162Scf00569g00535.1 | 0 | 26S proteasome non-ATPase regulatory subunit 12 homolog A |
| Petunia axillaris | Peaxi162Scf00025g10312.1 | 0 | 26S proteasome non-ATPase regulatory subunit 12 homolog A |
| Petunia inflata | Peinf101Scf01822g06017.1 | 0 | 26S proteasome non-ATPase regulatory subunit 12 homolog A |
| Petunia inflata | Peinf101Scf00753g08002.1 | 0 | 26S proteasome non-ATPase regulatory subunit 12 homolog A |
Gene family
KEGG pathway
| KO |
Enzyme |
Enzyme ID |
pathway |
mapID |
| K03035 | 26S proteasome non-ATPase regulatory subunit 12 homolog B-like |
|
Proteasome |
sly03050 |
PlantCyC
| Enzyme ID |
Description |
Pathway |
Pathway id |
| - | - | - | - |
Gene Ontology
| GO term | Description | Category |
|---|
| GO:0005515 | protein binding | molecular_function |
Pfam Domain
| Pfam accession | Pfam name | Alignment start | Alignment end |
|---|
| PF01399.23 | PCI | 290 | 399 |
Expression pattern