Solyc07g064130.1's detail annotation

Phytozome annotation

polyubiquitin 10

Network

Network CategoryGlobal NetworkTissue Preferential NetworkStress differential network
Coexpression PositiveTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
PPI relationshipSolyc01g102300.2  Solyc03g025950.2  Solyc04g008430.1  Solyc04g049790.2  Solyc06g008030.2  Solyc06g035870.2  Solyc07g061780.2  Solyc02g069680.2  
miRNA-target relationshipnull

Functional module

Module IDFunction AnnotationCategory
TissueCFM001164folic acid binding
FMN adenylyltransferase activity
riboflavin biosynthetic process
transferase activity
flavin biosynthesis I (bacteria and plants)
folate transformations II
Riboflavin metabolism
One carbon pool by folate
Bile secretion
Tissue preferential network

Location information

GeneAssemblySourcesChrStartEndStrand
Solyc07g064130.1SL2.40phytozomev10SL2.40ch076362971763631090+

Gene structure and chromatin state

more details in UCSCdetails of chromatin state

Sequences

Gene:
Transcript:
CDS:
Protein:

Top hits annotation

SpeciesTop HitsE-valueAnnotation
Arabidopsis thalianaAT4G053200ubiquitin 10
Nicotiana tabacumgene_329416.00E-102Ubiquitin
Nicotiana tabacumgene_544172.00E-98Ubiquitin
Nicotiana tabacumgene_756493.00E-154Ubiquitin
Solanum tuberosumPGSC0003DMP4000254280Associate of C-myc
Solanum tuberosumPGSC0003DMP4000070980Glutenin high molecular weight subunit DY10
Capsicum annuumCapang00g0024230
Capsicum annuumCA07g195400Ubiquitin2
Capsicum annuumCA00g796600Detected protein of confused Function
Capsicum annuumCA08g129300Ubiquitin
Solanum pennelliiSopen07g032270.10Ubiquitin family
Solanum pennelliiSopen11g001620.10Ubiquitin family
Solanum pennelliiSopen10g002430.10Ubiquitin family

Gene family

Gene familySubfamily
--

KEGG pathway

KO Enzyme Enzyme ID pathway mapID
-----

PlantCyC

Enzyme ID Description Pathway Pathway id
----

Gene Ontology

GO termDescriptionCategory
GO:0005515protein bindingmolecular_function

Pfam Domain

Pfam accessionPfam nameAlignment startAlignment end
PF00240.19ubiquitin674
PF00240.19ubiquitin82150
PF00240.19ubiquitin158226
PF00240.19ubiquitin234302
PF00240.19ubiquitin310378
PF00240.19ubiquitin386454

Expression pattern

 1. Expression trend for Solyc07g064130.1 global RNA-seq network
 2. Expression trend for Solyc07g064130.1 tissue preferential conditional network
 3. Expression trend for Solyc07g064130.1 stress differential conditional network
 4. Expression trend for Solyc07g064130.1 in different samples during fruit ripening
TOP