TissueCFM001164 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| folic acid binding | 0.001187529 | GO:0005542 |
| FMN adenylyltransferase activity | 0.001187529 | GO:0003919 |
| riboflavin biosynthetic process | 0.004747927 | GO:0009231 |
| transferase activity | 0.005536059 | GO:0016740 |
| flavin biosynthesis I (bacteria and plants) | 0.005175681 | plantCyc |
| folate transformations II | 0.005175681 | plantCyc |
| Riboflavin metabolism | 0.004482604 | KEGG |
| One carbon pool by folate | 0.004482604 | KEGG |
| Bile secretion | 0.004482604 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc03g117770.2 | Serinc-domain containing serine and sphingolipid biosynthesis protein | AT1G16180 (4.00E-166) |
| Solyc04g008990.2 | Nucleotidylyl transferase superfamily protein | AT5G23330 (1.00E-97) |
| Solyc06g064640.2 | alpha/beta-Hydrolases superfamily protein | AT4G10030 (4.00E-135) |
| Solyc07g054420.2 | transferases;folic acid binding | AT2G20830 (8.00E-101) |
| Solyc07g064130.1 | polyubiquitin 10 | AT4G05320 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000228 | Transcription_related, Transcription factor: VOZ Ubiquitin_Proteasome_system, E3: RING Bile secretion | details |
| TissueCFM000972 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor peptide-methionine-(S)-S-oxide reductase activity protein repair iron-sulfur cluster assembly iron-sulfur cluster binding methyltransferase activity | details |
| TissueCFM001037 | protein kinase C-activating G-protein coupled receptor signaling pathway steroid biosynthetic process diacylglycerol kinase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity kinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase UDP-L-arabinose biosynthesis I (from UDP-xylose) UDP-sugars interconversion phosphatidate metabolism, as a signaling molecule Bile secretion | details |
| TissueCFM001319 | mismatch repair complex reciprocal meiotic recombination mismatched DNA binding fructose-bisphosphate aldolase activity glycolysis Ubiquitin_Proteasome_system, DUB: USP glycolysis I (from glucose 6-phosphate) gluconeogenesis I Calvin-Benson-Bassham cycle glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) Mismatch repair Phenylalanine, tyrosine and tryptophan biosynthesis Taste transduction | details |
| TissueCFM001386 | homogentisate 1,2-dioxygenase activity L-phenylalanine catabolic process tyrosine metabolic process ubiquitin-protein ligase activity protein ubiquitination Styrene degradation Bile secretion | details |
| TissueCFM001419 | cellular amino acid metabolic process phenylalanine biosynthesis (cytosolic, plants) phospholipases Thyroid hormone signaling pathway Bile secretion Indole alkaloid biosynthesis | details |
| TissueCFM001507 | cellular amino acid metabolic process lyase activity fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) phenylalanine biosynthesis (cytosolic, plants) unsaturated, even numbered fatty acid β-oxidation Bile secretion | details |
Expression profiles
 Show details about module gene expression profiling |