Solyc08g029010.1's detail annotation

Phytozome annotation

Network

Network CategoryGlobal NetworkTissue Preferential NetworkStress differential network
Coexpression PositiveTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
PPI relationshipnull
miRNA-target relationshipnull

Functional module

Module IDFunction AnnotationCategory
CFinderADM000271signal recognition particle
mediator complex
SRP-dependent cotranslational protein targeting to membrane
regulation_of_gene_expression
regulation of transcription from RNA polymerase II promoter
E3: RING
Transcription regulator: SNF2
Peroxisome
global network

Location information

GeneAssemblySourcesChrStartEndStrand
Solyc08g029010.1SL2.40phytozomev10SL2.40ch082221263022213302-

Gene structure and chromatin state

more details in UCSCdetails of chromatin state

Sequences

Gene:
Transcript:
CDS:
Protein:

Top hits annotation

SpeciesTop HitsE-valueAnnotation

Gene family

Gene familySubfamily
--

KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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PlantCyC

Enzyme ID Description Pathway Pathway id
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Gene Ontology

GO termDescriptionCategory
---

Pfam Domain

Pfam accessionPfam nameAlignment startAlignment end
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Expression pattern

 1. Expression trend for Solyc08g029010.1 global RNA-seq network
 2. Expression trend for Solyc08g029010.1 tissue preferential conditional network
 3. Expression trend for Solyc08g029010.1 stress differential conditional network
 4. Expression trend for Solyc08g029010.1 in different samples during fruit ripening
TOP