Solyc09g010180.2's detail annotation

Phytozome annotation

Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network CategoryGlobal NetworkTissue Preferential NetworkStress differential network
Coexpression PositiveTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
PPI relationshipSolyc04g071990.2  Solyc06g060120.2  Solyc03g116320.2  Solyc06g070900.2  Solyc06g065650.2  Solyc12g056650.1  
miRNA-target relationshipsly-miR9476-3p  sly-miR164b-3p  

Functional module

Module IDFunction AnnotationCategory
CFinderADM001161Transcription factor: faR1
nucleobase-containing compound metabolic process
RNA-directed RNA polymerase activity
Transcription factor: C2H2
Influenza_A
Insulin_resistance
formation of glycosidic bonds, GlycosylTransferases: GTnc
global network

Location information

GeneAssemblySourcesChrStartEndStrand
Solyc09g010180.2SL2.40phytozomev10SL2.40ch0935567383572844+

Gene structure and chromatin state

more details in UCSCdetails of chromatin state

Sequences

Gene:
Transcript:
CDS:
Protein:

Top hits annotation

SpeciesTop HitsE-valueAnnotation
Arabidopsis thalianaAT3G042402.00E-78secret agent
Arabidopsis thalianaAT3G115400SPINDLY
Nicotiana tabacumgene_486391.00E-116TPR repeat-containing protein
Nicotiana tabacumgene_348440TPR repeat-containing protein
Nicotiana tabacumgene_477092.00E-98TPR repeat-containing protein
Nicotiana tabacumgene_332948.00E-77TPR repeat-containing protein
Nicotiana tabacumgene_333132.00E-84TPR repeat-containing protein
Nicotiana tabacumgene_333144.00E-28TPR repeat-containing protein
Nicotiana tabacumgene_332952.00E-74TPR repeat-containing protein
Nicotiana tabacumgene_346508.00E-77TPR repeat-containing protein
Nicotiana tabacumgene_346522.00E-74TPR repeat-containing protein
Nicotiana tabacumgene_346512.00E-84TPR repeat-containing protein
Nicotiana tabacumgene_346643.00E-40TPR repeat-containing protein
Nicotiana benthamiana(v0.44)NbS00031891g0005.18.00E-179TPR repeat-containing protein (AHRD V1 ***- B4D9Q4_9BACT)
Nicotiana benthamiana(v0.44)NbS00031891g0003.12.00E-50TPR repeat-containing protein (AHRD V1 ***- B4D9Q4_9BACT)
Nicotiana benthamiana(v0.44)NbS00057077g0008.10TPR repeat-containing protein (AHRD V1 ***- B4D9Q4_9BACT)
Nicotiana benthamiana(v0.44)NbS00031626g0005.10TPR repeat-containing protein (AHRD V1 ***- B4D9Q4_9BACT)
Solanum tuberosumPGSC0003DMP4000157250Conserved gene of unknown function
Solanum tuberosumPGSC0003DMP4000157272.00E-77Gene of unknown function
Capsicum annuumCapang09g0019430
Capsicum annuumCapang05g0018773E-83
Capsicum annuumCapang03g0040142E-72
Capsicum annuumCapana09g0024460
Capsicum annuumCapana05g0023334.00E-83
Capsicum annuumCapana03g0041812.00E-72
Capsicum annuumCA09g001400O-linked n-acetylglucosamine transferase, ogt, putative
Capsicum annuumCA00g900902.00E-82O-linked GlcNAc transferase like protein
Capsicum annuumCA05g176701.00E-79O-linked GlcNAc transferase like protein
Nicotiana benthamiana(v1.01)Niben101Scf00144g01015.10Photosystem I assembly protein Ycf3
Nicotiana benthamiana(v1.01)Niben101Scf07850g08003.10Photosystem I assembly protein Ycf3
Nicotiana benthamiana(v1.01)Niben101Scf07850g08002.10O-linked N-acetylglucosamine transferase, SPINDLY family [Thioploca ingrica]
Solanum pennelliiSopen09g004920.10Tetratricopeptide repeat
Solanum pennelliiSopen05g032310.12.00E-83Glycosyl transferase family 41
Solanum pennelliiSopen09g035770.12.00E-81Glycosyl transferase family 41
Petunia axillarisPeaxi162Scf00069g00320.10UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 11 kDa subunit
Petunia axillarisPeaxi162Scf00423g00724.15.00E-80UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 11 kDa subunit
Petunia axillarisPeaxi162Scf00286g00829.11.00E-79UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 11 kDa subunit
Petunia inflataPeinf101Scf00514g07001.10UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Petunia inflataPeinf101Scf00364g04015.11.00E-82UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Petunia inflataPeinf101Scf02685g00017.12.00E-79UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

Gene family

Gene familySubfamily
Carbohydrate-Active enzymes FamilyGT41

KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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PlantCyC

Enzyme ID Description Pathway Pathway id
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Gene Ontology

GO termDescriptionCategory
GO:0005515protein bindingmolecular_function

Pfam Domain

Pfam accessionPfam nameAlignment startAlignment end
PF13371.2TPR_956115
PF00515.24TPR_1116149
PF13424.2TPR_12191255
PF00515.24TPR_1300333
PF13414.2TPR_11334399
PF00515.24TPR_1402434
PF13844.2Glyco_transf_41488638
PF13844.2Glyco_transf_41655846

Expression pattern

 1. Expression trend for Solyc09g010180.2 global RNA-seq network
 2. Expression trend for Solyc09g010180.2 tissue preferential conditional network
 3. Expression trend for Solyc09g010180.2 stress differential conditional network
 4. Expression trend for Solyc09g010180.2 in different samples during fruit ripening
TOP

Maintained by Jiajie She in Zhen Su's Lab | China Agricultural University
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