Gene detail

Solyc10g052660.1's detail annotation

Phytozome annotation

	Ribosomal protein S25 family protein

Ribosomal protein S25 family protein

Network

Network Category	Global Network	Tissue Preferential Network	Stress differential network
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
PPI relationship	null
miRNA-target relationship	sly-miR9470-5p

Functional module

Module ID	Function Annotation	Category
CFinderADM000400	mitochondrial electron transport, ubiquinol to cytochrome c NADH dehydrogenase activity mitochondrial_respiratory_chain_complex_III anaphase-promoting complex mitochondrial inner membrane NADH dehydrogenase (ubiquinone) activity mitochondrion aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation aerobic respiration I (cytochrome c) Non-alcoholic_fatty_liver_disease_(NAFLD)	global network

Location information

Gene	Assembly	Sources	Chr	Start	End	Strand
Solyc10g052660.1	SL2.40	phytozomev10	SL2.40ch10	48687984	48689698	-

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Sequences

Gene:
>Solyc10g052660.1
ATGGTAAGCCGAGTAATCATCGTCAATACTGTTAATTCTATGTAACTTTGTTTTTCAATATCTGAATTTTGGTATTCTCTGTAGGCTCCAAAGAAGGCACAAGCTCCACCTCCATCTTCCAAGCCAGCAAAGTCCGGCGGTGGAAAGCAGAAGAAGAAGGTCATTACTTTCTACTGATTCGCTTAATAATACAGTTTTGGTTATCCGATGAGAATTTTGAAGGTACTTATGTAGATTTGTTATACATGAATGCAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTGTTGTTTGACAAGTCTACATACGATAAGCTACTCTCTGAAGCTCCTAAGTATAAGCTTATCACTCCTTCTGTCCTCTCCGATCGTCTCAGGGTATTGTTTTTTTTCTTTAATTTCAATTTTTACTTTTCCGATGATTGATTTGAGTATCTGTTTTACTATGGAATATTGTCAAATCCACACTAGATCGATGATCGTGTTTATGTATCTTCTCTATTAGAGTAGATTTTAGGTTTGTGATCTGGAGTCTTACAGCACACACTAATGCTTGTGTCCATGGTGTGATCTTAGCCCACATATACATTATATTTCTTAATTATTCCTTGTGTGTAAAGGTAGCTGCCCTTGTGCTACATCGATTCCTGAGAATTATTTGGACCTTAATATTAGCGTGAAATTGTTCTCTTGAGAAATGTATGTAAAGTTTATTGTTTTATCAATGATTCTATTATATTTGATATTAGCTTAAAAGATGGTATGTTAATAGTAGTGTAAACTATTGTCTTAGAAATTGTAAAGTGGTAATTTTGATGCTTCTCCAATGAACACTCCATCCATTCCTCTGTCCCCTTGTATCTGAAGGTCTTGCTATTATGGGAGTCTAACAAGTTTTCATTGACTATAGTTTTCTCAATCTTCTTAAATTTCTTAGTTATTTTGACTTGCATTACTTTTCATATGTCTTCAAATATGTAAAATTTATTTCAATATTTGAAGAATCTATAACCGAGTCAAAATCAAGTGTCTTTACTGTCATATACCAAACTCCTGCACAAGTATCGGGACAGGGTAAGTAGTTAACATGACAATTTGATGTTGGATTTCTGTAATTGCTTTGTTATTTGCACTTCCTCCACGTGGATTCTAGAGTCCCAATCAGTATCATGATGGATTCCACCAGTATCACCTGTTCATCTGATGTAGCATTTTTCTTGTGTCTGGTTTACAAGTATTTAGTTGAGGCTTATGGATGTTTTTTTGAGGGCGTTGTGTGTGATGGTGGTTGCCATTTTGCCTGTGTTTGTTTGGCTGTATGATGTGTCAAAATTAGGAGAACCATCAAAGCCTTAATAGAAGGATGAACTAATATTTAATGATCTGTTCTTGTTGTCGAGTGTAGTTGTCTCGTTATGCTTATGCTCATGAATATCATGATGCTAAACTTTGATTAAAAAGTTGTTTGATTATGATAATTTTATCAGTATTTGATTTGCATTGGCAGCAATTTTGAGTCACATCACATTTGTTTGTATGCTAATATGTCATTGTAATTTTGCTAATGTTGGATTTGAATGAATGTCCAGATTAGTGGATCACTTGCTAGGAAGGCAATTAGAGATTTGATGGCTAGAGGTTCAATCAGGATGGTATCTGCTCATGCAAGCCAGCAGATCTACACCAGGGCTACCAACACTTAA
Transcript:
Solyc10g052660.1.1
ATGGCTCCAAAGAAGGCACAAGCTCCACCTCCATCTTCCAAGCCAGCAAAGTCCGGCGGTGGAAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTGTTGTTTGACAAGTCTACATACGATAAGCTACTCTCTGAAGCTCCTAAGTATAAGCTTATCACTCCTTCTGTCCTCTCCGATCGTCTCAGGATTAGTGGATCACTTGCTAGGAAGGCAATTAGAGATTTGATGGCTAGAGGTTCAATCAGGATGGTATCTGCTCATGCAAGCCAGCAGATCTACACCAGGGCTACCAACACTTAA
CDS:
Solyc10g052660.1.1
ATGGCTCCAAAGAAGGCACAAGCTCCACCTCCATCTTCCAAGCCAGCAAAGTCCGGCGGTGGAAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAAAAGGTGAACAACATGGTGTTGTTTGACAAGTCTACATACGATAAGCTACTCTCTGAAGCTCCTAAGTATAAGCTTATCACTCCTTCTGTCCTCTCCGATCGTCTCAGGATTAGTGGATCACTTGCTAGGAAGGCAATTAGAGATTTGATGGCTAGAGGTTCAATCAGGATGGTATCTGCTCATGCAAGCCAGCAGATCTACACCAGGGCTACCAACACTTAA
Protein:
Solyc10g052660.1.1
MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT*

Top hits annotation

Species	Top Hits	E-value	Annotation
Nicotiana tabacum	gene_37273	5.00E-52	40S ribosomal protein S25-1
Nicotiana tabacum	gene_371	5.00E-52	40S ribosomal protein S25-1
Nicotiana tabacum	gene_19556	5.00E-52	40S ribosomal protein S25-1
Nicotiana tabacum	gene_37216	2.00E-51	40S ribosomal protein S25-1
Nicotiana tabacum	gene_11234	4.00E-50	40S ribosomal protein S25-1
Nicotiana tabacum	gene_35772	5.00E-52	40S ribosomal protein S25-1
Nicotiana tabacum	gene_35702	5.00E-52	40S ribosomal protein S25-1
Nicotiana tabacum	gene_84011	5.00E-52	40S ribosomal protein S25-1
Nicotiana tabacum	gene_85323	5.00E-52	40S ribosomal protein S25-1
Nicotiana tabacum	gene_21890	5.00E-52	40S ribosomal protein S25-1
Nicotiana tabacum	gene_36797	5.00E-52	40S ribosomal protein S25-1
Nicotiana tabacum	gene_28399	2.00E-51	40S ribosomal protein S25-1
Nicotiana benthamiana(v0.44)	NbS00021083g0007.1	3.00E-49	40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE)
Nicotiana benthamiana(v0.44)	NbS00009478g0006.1	3.00E-49	40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE)
Nicotiana benthamiana(v0.44)	NbS00024925g0012.1	3.00E-49	40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE)
Nicotiana benthamiana(v0.44)	NbS00017796g0009.1	3.00E-48	40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE)
Nicotiana benthamiana(v0.44)	NbS00023243g0003.1	3.00E-23	40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE)
Capsicum annuum	Capang01g004944	8E-37
Capsicum annuum	Capang02g001216	3E-35
Capsicum annuum	Capang01g004537	6E-33
Capsicum annuum	CA02g04710	3.00E-35	PREDICTED: 40S ribosomal protein S25-2-like [Solanum lycopersicum]
Capsicum annuum	CA00g60360	4.00E-32	Unknown protein
Petunia axillaris	Peaxi162Scf00003g01123.1	4.00E-36	Ribosomal protein S25 family protein
Petunia axillaris	Peaxi162Scf00684g00227.1	7.00E-36	4S ribosomal protein S25
Petunia inflata	Peinf101Scf00019g12016.1	4.00E-36	Ribosomal protein S25 family protein
Petunia inflata	Peinf101Scf00661g01037.1	1.00E-35	40S ribosomal protein S25

Gene family

Gene family	Subfamily
-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02975	RPS25; ribosomal protein S25		Ribosome	sly03010

PlantCyC

Enzyme ID	Description	Pathway	Pathway id
-	-	-	-

Gene Ontology

GO term	Description	Category
-	-	-

Pfam Domain

Pfam accession	Pfam name	Alignment start	Alignment end
PF03297.11	Ribosomal_S25	11	105

Expression pattern

1. Expression trend for Solyc10g052660.1 global RNA-seq network

2. Expression trend for Solyc10g052660.1 tissue preferential conditional network

3. Expression trend for Solyc10g052660.1 stress differential conditional network

4. Expression trend for Solyc10g052660.1 in different samples during fruit ripening

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