Solyc10g078730.1's detail annotation

Phytozome annotation

Nse4, component of Smc5/6 DNA repair complex

Network

Network CategoryGlobal NetworkTissue Preferential NetworkStress differential network
Coexpression PositiveTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
PPI relationshipnull
miRNA-target relationshipsly-miR482d-5p  

Functional module

Module IDFunction AnnotationCategory
TissueCFM000740centromeric DNA binding
kinetochore_assembly
kinetochore
Smc5-Smc6_complex
nucleic acid binding
Ubiquitin_Proteasome_system, E3 adaptor: DWD
Tissue preferential network

Location information

GeneAssemblySourcesChrStartEndStrand
Solyc10g078730.1SL2.40phytozomev10SL2.40ch105978805559791278+

Gene structure and chromatin state

more details in UCSCdetails of chromatin state

Sequences

Gene:
Transcript:
CDS:
Protein:

Top hits annotation

SpeciesTop HitsE-valueAnnotation
Nicotiana tabacumgene_521730Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_499190Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_46570Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_108720Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_64210Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_516890Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_530040Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_843400Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_815140Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_100202.00E-111Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_515925.00E-120Non-structural maintenance of chromosome element 4
Nicotiana tabacumgene_43280Non-structural maintenance of chromosome element 4
Nicotiana benthamiana(v0.44)NbS00010337g0011.10Non-structural maintenance of chromosome element 4 (AHRD V1 **-- B6K0D9_SCHJY)
Nicotiana benthamiana(v0.44)NbS00026298g0007.11.00E-139Non-structural maintenance of chromosome element 4 (AHRD V1 **-- B6K0D9_SCHJY)
Solanum tuberosumPGSC0003DMP4000202200Conserved gene of unknown function
Solanum tuberosumPGSC0003DMP4000202180Conserved gene of unknown function
Solanum tuberosumPGSC0003DMP4000202196.00E-103Ankyrin repeat-containing protein
Capsicum annuumCapang10g0021416E-174
Capsicum annuumCapang01g0012912E-84
Capsicum annuumCapang12g0009242E-67
Capsicum annuumCapana10g0023837.00E-174
Capsicum annuumCapana01g0014792.00E-84
Capsicum annuumCA10g209101.00E-170Detected protein of unknown function
Capsicum annuumCA01g277001.00E-73PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Solanum tuberosum]
Nicotiana benthamiana(v1.01)Niben101Scf00340g03005.19.00E-175Non-structural maintenance of chromosomes element 4 homolog A
Nicotiana benthamiana(v1.01)Niben101Scf06661g04005.11.00E-140Nse4, component of Smc5/6 DNA repair complex LENGTH=403
Nicotiana benthamiana(v1.01)Niben101Scf02793g24015.16.00E-128Nse4, component of Smc5/6 DNA repair complex LENGTH=403
Solanum pennelliiSopen10g029350.10Nse4 C-terminal
Solanum pennelliiSopen12g020660.15.00E-83Nse4 C-terminal
Solanum pennelliiSopen01g002450.17.00E-75Nse4 C-terminal
Petunia axillarisPeaxi162Scf00003g04331.12.00E-164Nse4, component of Smc5/6 DNA repair complex, putative isoform 1 [Theobroma cacao] gb|EOY32461.1| Nse4, component of Smc5/6 DNA repair complex, putative isoform 1 [Theobroma cacao]
Petunia axillarisPeaxi162Scf00258g00424.15.00E-128Nse4, component of Smc5/6 DNA repair complex
Petunia axillarisPeaxi162Scf00403g00111.12.00E-90Nse4, component of Smc5/6 DNA repair complex
Petunia inflataPeinf101Scf00049g01026.18.00E-165Nse4, component of Smc5/6 DNA repair complex, putative isoform 1
Petunia inflataPeinf101Scf00835g10022.16.00E-128Nse4, component of Smc5/6 DNA repair complex
Petunia inflataPeinf101Scf03615g00019.12.00E-81Nse4, component of Smc5/6 DNA repair complex
Solanum melongenaSme2.5_00622.1_g00025.10

Gene family

Gene familySubfamily
--

KEGG pathway

KO Enzyme Enzyme ID pathway mapID
-----

PlantCyC

Enzyme ID Description Pathway Pathway id
----

Gene Ontology

GO termDescriptionCategory
---

Pfam Domain

Pfam accessionPfam nameAlignment startAlignment end
PF08743.6Nse4_C242330

Expression pattern

 1. Expression trend for Solyc10g078730.1 global RNA-seq network
 2. Expression trend for Solyc10g078730.1 tissue preferential conditional network
 3. Expression trend for Solyc10g078730.1 stress differential conditional network
 4. Expression trend for Solyc10g078730.1 in different samples during fruit ripening
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