CFinderADM000344 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| ammonium_transmembrane_transport | 0.009854553 | GO:0072488 |
| ammonium_transport | 0.009854553 | GO:0015696 |
| ammonium transmembrane transporter activity | 0.014386209 | GO:0008519 |
| amino acid binding | 0.015811167 | GO:0016597 |
| metabolic process | 0.018423063 | GO:0008152 |
| vitamin E biosynthesis (tocotrienols) | 0.005061759 | plantCyc |
| vitamin E biosynthesis (tocotrienols) | 0.005061759 | plantCyc |
| valine biosynthesis | 0.005061759 | plantCyc |
| Ubiquinone_and_other_terpenoid-quinone_biosynthesis | 0.024140648 | KEGG |
| Pantothenate_and_CoA_biosynthesis | 0.024140648 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc03g033300.1 | ammonium transporter 2 | AT2G38290 (2.00E-149) |
| Solyc04g007690.2 | Auxin efflux carrier family protein | AT1G70940 (0) |
| Solyc07g062040.2 | Protein kinase superfamily protein | AT1G78530 (8.00E-132) |
| Solyc08g076360.2 | gamma-tocopherol methyltransferase | AT1G64970 (2.00E-116) |
| Solyc11g008780.1 | ACT domain-containing small subunit of acetolactate synthase protein | AT2G31810 (1.00E-178) |
| Solyc12g100120.1 | Putative glycosyl hydrolase of unknown function (DUF1680) | AT5G12950 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000016 | transmembrane transport membrane integral to membrane pectate lyase activity cation transport solute:hydrogen antiporter activity protein phosphorylation protein kinase activity exocytosis phospholipid binding response to stress vesicle docking enzyme inhibitor activity PPC:5.2.1: Other Kinase Transcription factor: LIM nutrient reservoir activity cell wall transferase activity, transferring glycosyl groups cell wall modification pectinesterase activity Pentose_and_glucuronate_interconversions non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | details |
| CFinderADM000208 | ammonium_transmembrane_transport cell proliferation carbohydrate metabolic process ammonium_transport ammonium transmembrane transporter activity growth factor activity hydrolase activity, hydrolyzing O-glycosyl compounds cellular glucan metabolic process extracellular region xyloglucan:xyloglucosyl transferase activity coenzyme binding UDP-D-xylose biosynthesis Plant-pathogen_interaction Plant_hormone_signal_transduction adhesion to carbohydrates, Glycoside Hydrolases:CBM18;hydrolysis and/or rearrangement of glycosidic bonds, Carbohydrate-Binding Modules:GH19 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000412 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity NADPH_binding terpenoid biosynthetic process metabolic process Transcription regulator: ARF methylerythritol phosphate pathway II vitamin E biosynthesis (tocotrienols) vitamin E biosynthesis (tocotrienols) methylerythritol phosphate pathway I valine biosynthesis phospholipid remodeling (phosphatidylcholine, yeast) CDP-diacylglycerol biosynthesis I cellulose biosynthesis Terpenoid_backbone_biosynthesis Ether_lipid_metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000486 | Cytochrome P450: CYP716H base-excision repair metabolic process betulinate biosynthesis ursolate biosynthesis valine biosynthesis justicidin B biosynthesis matairesinol biosynthesis CDP-diacylglycerol biosynthesis I triacylglycerol biosynthesis Base_excision_repair Fat_digestion_and_absorption Pantothenate_and_CoA_biosynthesis | details |
| CFinderADM000487 | Cytochrome P450: CYP716H base-excision repair metabolic process DNA-3-methyladenine glycosylase activity transferase activity, transferring acyl groups amino acid binding betulinate biosynthesis ursolate biosynthesis valine biosynthesis justicidin B biosynthesis matairesinol biosynthesis CDP-diacylglycerol biosynthesis I triacylglycerol biosynthesis Pantothenate_and_CoA_biosynthesis Base_excision_repair Fat_digestion_and_absorption | details |
Expression profiles
 Show details about module gene expression profiling |