CFinderADM000494 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| retromer complex | 0.007121891 | GO:0030904 |
| retrograde transport, endosome to Golgi | 0.015103563 | GO:0042147 |
| microtubule | 0.022719321 | GO:0005874 |
| protein transport | 0.025091595 | GO:0015031 |
| microtubule-based process | 0.025091595 | GO:0007017 |
| Transcription regulator: C3H | 0.048621168 | gene family |
| Nicotinate_and_nicotinamide_metabolism | 0.012881994 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g063050.2 | AT5G23490 (8.00E-179) | |
| Solyc02g086510.2 | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | AT3G27700 (2.00E-149) |
| Solyc03g033400.2 | VPS35 homolog B | AT1G75850 (0) |
| Solyc04g007370.2 | Chaperone DnaJ-domain superfamily protein | AT1G68370 (0) |
| Solyc04g008550.2 | CCCH-type zinc finger family protein | AT2G02160 (7.00E-80) |
| Solyc04g011500.2 | actin-11 | AT3G12110 (0) |
| Solyc04g081490.2 | tubulin beta-1 chain | AT1G75780 (0) |
| Solyc09g010820.2 | myb domain protein 3r-5 | AT5G02320 (4.00E-110) |
| Solyc10g086540.1 | FTSH protease 10 | AT2G29080 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000016 | transmembrane transport membrane integral to membrane pectate lyase activity cation transport solute:hydrogen antiporter activity protein phosphorylation protein kinase activity exocytosis phospholipid binding response to stress vesicle docking enzyme inhibitor activity PPC:5.2.1: Other Kinase Transcription factor: LIM nutrient reservoir activity cell wall transferase activity, transferring glycosyl groups cell wall modification pectinesterase activity Pentose_and_glucuronate_interconversions non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | details |
| CFinderADM000118 | E3 adaptor: DWD nuclear pore small-subunit processome nucleus ribosome biogenesis rRNA processing tRNA aminoacylation for protein translation DNA recombination transcription, DNA-dependent DNA-directed RNA polymerase activity tRNA charging Epstein-Barr_virus_infection | details |
| CFinderADM000309 | integral to nuclear inner membrane ATP-dependent_5'-3'_DNA_helicase_activity protein_peptidyl-prolyl_isomerization protein folding peptidyl-prolyl cis-trans isomerase activity DNA helicase activity | details |
| CFinderADM000332 | microtubule endoplasmic reticulum membrane microtubule-based process SOCS/VHL/BC-box: 3_box Transcription factor: Alfin-like Transcription regulator: TRAF E3 adaptor: BTB GTPase activity histone_binding Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000339 | glycolipid transport glycolipid binding glycolipid transporter activity microtubule-based process DUB: USP protein domain specific binding microtubule GTPase activity cytoplasm Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000347 | integral to Golgi membrane intra-Golgi vesicle-mediated transport E3 adaptor: Cullin ubiquitin protein ligase binding ubiquitin-dependent protein catabolic process | details |
| CFinderADM000355 | tRNA_guanylyltransferase_activity tRNA modification Ino80_complex magnesium ion binding | details |
| CFinderADM000395 | microtubule-based process microtubule GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000397 | microtubule microtubule-based process GTPase activity PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Transcription factor: bHLH Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000407 | poly(A)+ mRNA export from nucleus nuclear pore E3: U-box protein_peptidyl-prolyl_isomerization protein folding peptidyl-prolyl cis-trans isomerase activity Cationic_antimicrobial_peptide_(CAMP)_resistance | details |
| CFinderADM000419 | DNA-directed DNA polymerase activity transcription, DNA-dependent DNA binding Platinum_drug_resistance Herpes_simplex_infection | details |
| CFinderADM000445 | histone_lysine_methylation Transcription regulator: SET DUB: ULP histone-lysine N-methyltransferase activity histone_binding MicroRNAs_in_cancer Wnt_signaling_pathway | details |
| CFinderADM000485 | TFIIK_complex phosphatidylinositol-mediated signaling transcription, DNA-dependent microtubule regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity phosphatidylinositol phosphorylation microtubule-based process arginine degradation I (arginase pathway) arginine degradation VI (arginase 2 pathway) proline biosynthesis III L-Nδ-acetylornithine biosynthesis | details |
| CFinderADM000490 | protein prenyltransferase activity transcription_corepressor_activity protein_prenylation transcription, DNA-dependent Terpenoid_backbone_biosynthesis | details |
| CFinderADM000493 | ubiquitin-specific_protease_activity cellular amino acid metabolic process DUB: USP glutamate biosynthesis III Arginine_biosynthesis | details |
| CFinderADM000548 | microtubule Transcription factor: faR1 tRNA dihydrouridine synthase activity Transcription regulator: C3H | details |
| CFinderADM000549 | regulation of transcription from RNA polymerase III promoter ATP-dependent_5'-3'_DNA_helicase_activity protein_peptidyl-prolyl_isomerization | details |
| CFinderADM000566 | microtubule Transcription factor: G2-like Transcription factor: bZIP microtubule-based process steroid biosynthetic process L-ascorbate biosynthesis V superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis UDP-sugars interconversion UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Nicotinate_and_nicotinamide_metabolism Amino_sugar_and_nucleotide_sugar_metabolism | details |
| CFinderADM000574 | Transcription factor: E2F-DP transcription factor complex triacylglycerol degradation Retrograde_endocannabinoid_signaling | details |
| CFinderADM000605 | microtubule-based process microtubule protein domain specific binding GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000623 | microtubule microtubule-based process GTPase activity coenzyme A biosynthetic process fatty acid beta-oxidation pantothenate kinase activity acyl-CoA oxidase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) phosphopantothenate biosynthesis I mevalonate pathway I lysine degradation II methyl ketone biosynthesis Peroxisome Two-component_system PPAR_signaling_pathway Nicotinate_and_nicotinamide_metabolism Biotin_metabolism | details |
| CFinderADM000624 | microtubule microtubule-based process protein domain specific binding anthocyanidin modification (Arabidopsis) Anthocyanin_biosynthesis Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000628 | microtubule-based process microtubule GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000639 | PPC:4.2.1: Calcium Dependent Protein Kinase microtubule microtubule-based process calmodulin binding GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000642 | nucleic acid binding DUB: USP microtubule-based process translational initiation RNA_transport | details |
| CFinderADM000700 | ubiquitin-dependent protein catabolic process F-actin capping protein complex ubiquitin ligase complex barbed-end_actin_filament_capping ubiquitin-ubiquitin ligase activity exocyst ubiquitin protein ligase binding E3 adaptor: Cullin exocytosis E3: U-box protein ubiquitination ubiquitin-protein ligase activity | details |
| CFinderADM000753 | GTPase activity GTP binding retromer complex retrograde transport, endosome to Golgi exocyst protein transporter activity protein transport exocytosis | details |
| CFinderADM000754 | retromer complex retrograde transport, endosome to Golgi exocyst exocytosis protein transport protein transporter activity GTPase activity | details |
| CFinderADM000761 | retrograde transport, endosome to Golgi nucleus cytoplasm phosphopyruvate hydratase complex 1,3-beta-D-glucan synthase complex retromer complex Cdc73/Paf1 complex glutaminyl-tRNA aminoacylation Alzheimer's_disease | details |
| CFinderADM000762 | tRNA aminoacylation for protein translation Transcription factor: BSD aminoacyl-tRNA ligase activity nucleotide binding glutaminyl-tRNA aminoacylation glutamine-tRNA ligase activity core TFIIH complex E1: ThiF tRNA binding DNA topoisomerase (ATP-hydrolyzing) activity ligase activity, forming aminoacyl-tRNA and related compounds tRNA aminoacylation nucleotide-excision repair DNA topological change small protein activating enzyme activity ATP binding tRNA charging Aminoacyl-tRNA_biosynthesis | details |
| CFinderADM000866 | metalloexopeptidase activity aminopeptidase activity unfolded protein binding E3 adaptor: DWD cellular amino acid metabolic process glutamate biosynthesis III Arginine_biosynthesis | details |
| CFinderADM000884 | microtubule microtubule-based process GTPase activity protein glycosylation galactosyltransferase activity phospholipid remodeling (phosphatidylcholine, yeast) thioredoxin pathway phosphatidylcholine acyl editing Ether_lipid_metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000892 | metalloexopeptidase activity E3 adaptor: Cullin aminopeptidase activity ubiquitin protein ligase binding cellular amino acid metabolic process glutamate biosynthesis III Arginine_biosynthesis | details |
| CFinderADM000906 | transferase activity, transferring acyl groups calcium ion binding 2-oxoglutarate decarboxylation to succinyl-CoA Lysine_degradation | details |
| CFinderADM000919 | microtubule microtubule-based process GTPase activity jasmonic_acid_metabolic_process induced_systemic_resistance,_jasmonic_acid_mediated_signaling_pathway jasmonate-amino_synthetase_activity response to wounding kinesin complex microtubule-based movement jasmonoyl-amino acid conjugates biosynthesis II jasmonoyl-amino acid conjugates biosynthesis I Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000929 | gene silencing by RNA DUB: ULP RNA processing Wnt_signaling_pathway | details |
| CFinderADM000930 | NuA4_histone_acetyltransferase_complex Piccolo_NuA4_histone_acetyltransferase_complex regulation of transcription from RNA polymerase II promoter DUB: ULP Wnt_signaling_pathway | details |
| CFinderADM000944 | details | |
| CFinderADM000975 | nuclear chromosome | details |
| CFinderADM000994 | DUB: USP E3: HECT protein glycosylation Epstein-Barr_virus_infection Various_types_of_N-glycan_biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001001 | Transcription factor: E2F-DP transcription factor complex ATP-dependent_5'-3'_DNA_helicase_activity protein_peptidyl-prolyl_isomerization peptidyl-prolyl cis-trans isomerase activity DNA helicase activity protein folding | details |
| CFinderADM001007 | E3: HECT DNA recombination four-way junction helicase activity protein binding DNA repair Taste_transduction | details |
| CFinderADM001024 | E3 adaptor: DWD | details |
| CFinderADM001050 | isoprenoid biosynthetic process metalloendopeptidase activity linalool biosynthesis I trans, trans-farnesyl diphosphate biosynthesis linalool biosynthesis II nonaprenyl diphosphate biosynthesis II superpathway of linalool biosynthesis geranyl diphosphate biosynthesis triacylglycerol biosynthesis Terpenoid_backbone_biosynthesis RNA_degradation Choline_metabolism_in_cancer | details |
| CFinderADM001068 | SAGA complex microtubule four-way junction helicase activity protein binding transcription cofactor activity DNA recombination microtubule-based process GTPase activity Taste_transduction Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001122 | DNA topological change DNA topoisomerase type I activity DNA topoisomerase (ATP-hydrolyzing) activity chromosome Ino80_complex Fanconi_anemia_pathway | details |
| CFinderADM001127 | details | |
| CFinderADM001146 | microtubule-based process microtubule GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001148 | Transcription regulator: SET histone_lysine_methylation SRP-dependent cotranslational protein targeting to membrane exocytosis signal recognition particle exocyst histone_binding histone-lysine N-methyltransferase activity 7S RNA binding Quorum_sensing MicroRNAs_in_cancer | details |
| CFinderADM001204 | microtubule-based process microtubule GTPase activity RNA methyltransferase activity endoplasmic reticulum membrane RNA processing Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001208 | microtubule microtubule-based process DUB: USP Transcription regulator: C3H Transcription factor: C2H2 Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM001260 | nucleus E3 adaptor: DDB1 mRNA processing regulation of transcription, DNA-dependent calcium ion binding | details |
| CFinderADM001310 | phenylalanyl-tRNA aminoacylation nuclear pore phenylalanine-tRNA ligase activity tRNA charging Aminoacyl-tRNA_biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |