CFinderADM000508 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| mediator complex | 2.29E-05 | GO:0016592 |
| regulation of transcription from RNA polymerase II promoter | 0.000134311 | GO:0006357 |
| RNA_polymerase_II_transcription_cofactor_activity | 0.000245588 | GO:0001104 |
| E3 adaptor: DWD | 0.005836467 | gene family |
| Transcription factor: Alfin-like | 0.006960019 | gene family |
| DUB: USP | 0.018916971 | gene family |
| protein binding | 0.032950757 | GO:0005515 |
| histone_binding | 0.032950757 | GO:0042393 |
| DNA-directed RNA polymerase activity | 0.048288154 | GO:0003899 |
| Epstein-Barr_virus_infection | 0.001706709 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g068480.2 | Ubiquitin C-terminal hydrolases superfamily protein | AT4G22285 (0) |
| Solyc03g059100.1 | Transducin/WD40 repeat-like superfamily protein | AT2G43770 (7.00E-169) |
| Solyc03g118380.1 | RNA polymerase Rpb7-like, N-terminal domain | AT4G14660 (3.00E-63) |
| Solyc04g014700.2 | Expressed protein | AT3G01435 (4.00E-31) |
| Solyc04g016510.2 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related | AT2G41500 (2.00E-171) |
| Solyc06g005600.2 | scarecrow-like transcription factor 11 (SCL11) | |
| Solyc06g051420.2 | alfin-like 1 | AT5G05610 (1.00E-81) |
| Solyc12g009090.1 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | AT2G28230 (2.00E-94) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000339 | glycolipid transport glycolipid binding glycolipid transporter activity microtubule-based process DUB: USP protein domain specific binding microtubule GTPase activity cytoplasm Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000509 | E3 adaptor: DWD DUB: JAMM Transcription factor: Alfin-like mediator complex protein binding N-terminal protein amino acid methylation nucleoside metabolic process RNA_polymerase_II_transcription_cofactor_activity histone_binding regulation of transcription from RNA polymerase II promoter DNA-directed RNA polymerase activity PRPP biosynthesis I Purine_metabolism Proteasome | details |
| CFinderADM000616 | E3 adaptor: DWD nucleolus protein domain specific binding | details |
| CFinderADM000617 | E3 adaptor: DWD nucleolus protein binding | details |
| CFinderADM000642 | nucleic acid binding DUB: USP microtubule-based process translational initiation RNA_transport | details |
| CFinderADM000786 | nucleolus nuclear mRNA splicing, via spliceosome snRNA_binding E3 adaptor: DWD | details |
| CFinderADM001208 | microtubule microtubule-based process DUB: USP Transcription regulator: C3H Transcription factor: C2H2 Nicotinate_and_nicotinamide_metabolism | details |
Expression profiles
 Show details about module gene expression profiling |