CFinderADM000616 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| E3 adaptor: DWD | 0.000573263 | gene family |
| nucleolus | 0.000863483 | GO:0005730 |
| protein domain specific binding | 0.01328903 | GO:0019904 |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g010440.2 | glycine-rich protein | AT1G27090 (7.00E-83) |
| Solyc04g016510.2 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related | AT2G41500 (2.00E-171) |
| Solyc04g025670.2 | RNA-processing, Lsm domain | |
| Solyc04g082470.1 | Transducin/WD40 repeat-like superfamily protein | AT1G12910 (0) |
| Solyc07g063270.2 | GTP-binding family protein | AT1G52980 (0) |
| Solyc12g057110.2 | general regulatory factor 2 | AT1G78300 (2.00E-128) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000339 | glycolipid transport glycolipid binding glycolipid transporter activity microtubule-based process DUB: USP protein domain specific binding microtubule GTPase activity cytoplasm Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000425 | mitochondrion_organization positive_regulation_of_autophagy E3: RING phosphatidylglycerol biosynthesis II (non-plastidic) cardiolipin biosynthesis II phosphatidylglycerol biosynthesis I (plastidic) | details |
| CFinderADM000484 | vesicle_fusion_with_Golgi_apparatus RNA polyadenylation Golgi vesicle transport phosphatidylinositol-mediated signaling phosphatidylinositol phosphorylation Golgi membrane protein domain specific binding polynucleotide adenylyltransferase activity nucleotidyltransferase activity protein transporter activity phosphotransferase activity, alcohol group as acceptor 3-phosphoinositide biosynthesis Tuberculosis RNA_degradation | details |
| CFinderADM000485 | TFIIK_complex phosphatidylinositol-mediated signaling transcription, DNA-dependent microtubule regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity phosphatidylinositol phosphorylation microtubule-based process arginine degradation I (arginase pathway) arginine degradation VI (arginase 2 pathway) proline biosynthesis III L-Nδ-acetylornithine biosynthesis | details |
| CFinderADM000508 | mediator complex regulation of transcription from RNA polymerase II promoter RNA_polymerase_II_transcription_cofactor_activity E3 adaptor: DWD Transcription factor: Alfin-like DUB: USP protein binding histone_binding DNA-directed RNA polymerase activity Epstein-Barr_virus_infection | details |
| CFinderADM000551 | phosphatidylinositol-mediated signaling phosphatidylinositol phosphorylation protein domain specific binding phosphotransferase activity, alcohol group as acceptor lipid binding 3-phosphoinositide biosynthesis Tuberculosis | details |
| CFinderADM000577 | molybdopterin cofactor biosynthetic process protein domain specific binding heme biosynthesis I (aerobic) chlorophyllide a biosynthesis I (aerobic, light-dependent) molybdenum cofactor biosynthesis GABAergic_synapse Porphyrin_and_chlorophyll_metabolism | details |
| CFinderADM000597 | protein domain specific binding Longevity_regulating_pathway_-_worm | details |
| CFinderADM000605 | microtubule-based process microtubule protein domain specific binding GTPase activity Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000617 | E3 adaptor: DWD nucleolus protein binding | details |
| CFinderADM000624 | microtubule microtubule-based process protein domain specific binding anthocyanidin modification (Arabidopsis) Anthocyanin_biosynthesis Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000687 | E3 adaptor: DWD mediator complex Transcription regulator: C3H | details |
| CFinderADM000698 | protein domain specific binding protein_peptidyl-prolyl_isomerization peptidyl-prolyl cis-trans isomerase activity protein folding E3 adaptor: DWD Terpenoid_backbone_biosynthesis Cationic_antimicrobial_peptide_(CAMP)_resistance | details |
| CFinderADM000724 | E3 adaptor: DWD vesicle_fusion_with_Golgi_apparatus vesicle-mediated transport intracellular protein transport phosphatidylinositol-mediated signaling RNA polyadenylation Golgi vesicle transport 3-phosphoinositide biosynthesis pyrimidine ribonucleosides salvage I | details |
| CFinderADM000733 | fatty acid biosynthetic process small GTPase mediated signal transduction nucleobase-containing compound metabolic process protein domain specific binding 3'-5' exonuclease activity Steroid_biosynthesis | details |
| CFinderADM000786 | nucleolus nuclear mRNA splicing, via spliceosome snRNA_binding E3 adaptor: DWD | details |
| CFinderADM000918 | spliceosomal complex RNA splicing protein domain specific binding FAD binding ribosome biogenesis protein_peptidyl-prolyl_isomerization peptidyl-prolyl cis-trans isomerase activity protein folding Cationic_antimicrobial_peptide_(CAMP)_resistance | details |
| CFinderADM001219 | phosphatidylinositol-mediated signaling phosphatidylinositol phosphorylation protein domain specific binding phosphotransferase activity, alcohol group as acceptor 3-phosphoinositide biosynthesis Tuberculosis | details |
Expression profiles
 Show details about module gene expression profiling |