CFinderADM000569 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| vesicle-mediated transport | 0.000801684 | GO:0016192 |
| intracellular protein transport | 0.000801684 | GO:0006886 |
| regulation of ARF protein signal transduction | 0.004271167 | GO:0032012 |
| clathrin coat of trans-Golgi network vesicle | 0.005695545 | GO:0030130 |
| clathrin coat of coated pit | 0.005695545 | GO:0030132 |
| membrane coat | 0.009006532 | GO:0030117 |
| ARF guanyl-nucleotide exchange factor activity | 0.019394288 | GO:0005086 |
| structural molecule activity | 0.019394288 | GO:0005198 |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc00g007110.2 | Calcium-binding EF hand family protein | AT1G21630 (5.00E-51) |
| Solyc00g007120.2 | Calcium-binding EF hand family protein | AT1G21630 (2.00E-141) |
| Solyc01g091460.2 | SEC7-like guanine nucleotide exchange family protein | AT3G60860 (0) |
| Solyc01g094060.2 | WD-40 repeat family protein / beige-related | AT2G45540 (0) |
| Solyc01g100410.2 | Iron-sulphur cluster biosynthesis family protein | AT5G03905 (4.00E-49) |
| Solyc06g051310.2 | Clathrin, heavy chain | AT3G11130 (0) |
| Solyc07g008090.2 | Transducin family protein / WD-40 repeat family protein | AT3G33530 (3.00E-92) |
| Solyc11g066760.1 | alpha-adaptin | AT5G22770 (0) |
| Solyc11g068670.1 | AT3G44330 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000343 | mediator complex Transcription regulator: PHD RNA_polymerase_II_transcription_cofactor_activity regulation of transcription from RNA polymerase II promoter MicroRNAs_in_cancer | details |
| CFinderADM000373 | Golgi to plasma membrane transport response to hormone stimulus Transcription regulator: ARF exocyst formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000401 | phosphoenolpyruvate carboxylase activity malate_dehydrogenase_(decarboxylating)_(NAD+)_activity carbon fixation tricarboxylic acid cycle solute:hydrogen antiporter activity cation transport CO2 fixation into oxaloacetate (anapleurotic) glutamine biosynthesis III TCA cycle variation V (plant) gluconeogenesis I Methane_metabolism Carbon_fixation_in_photosynthetic_organisms | details |
| CFinderADM000488 | mannose metabolic process mannosidase activity alpha-mannosidase activity protein phosphatase type 2A complex protein phosphatase type 2A regulator activity ionotropic glutamate receptor activity galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity membrane zinc ion binding CDP-diacylglycerol biosynthesis II xylan biosynthesis CDP-diacylglycerol biosynthesis I Lysosome Phosphatidylinositol_signaling_system formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000489 | IMP salvage deaminase activity AMP deaminase activity ionotropic glutamate receptor activity CDP-diacylglycerol biosynthesis II CDP-diacylglycerol biosynthesis I adenosine nucleotides degradation I Purine_metabolism Phosphatidylinositol_signaling_system | details |
| CFinderADM000525 | intra-Golgi vesicle-mediated transport Golgi_transport_complex regulation of ARF protein signal transduction proton-transporting V-type ATPase, V0 domain ARF guanyl-nucleotide exchange factor activity hydrogen ion transmembrane transporter activity ATP hydrolysis coupled proton transport | details |
| CFinderADM000585 | PPC:2.1.3: CTR1/EDR1 Kinase ionotropic glutamate receptor activity amino acid binding Two-component_system beta-Lactam_resistance | details |
| CFinderADM000615 | RNA methylation Transcription factor: C2H2 RNA methyltransferase activity protein folding transcription, DNA-dependent Epstein-Barr_virus_infection | details |
| CFinderADM000656 | Cdc73/Paf1 complex histone modification Epstein-Barr_virus_infection | details |
| CFinderADM000679 | PPC:2.1.3: CTR1/EDR1 Kinase IMP salvage mannose metabolic process mannosidase activity deaminase activity alpha-mannosidase activity AMP deaminase activity mismatched DNA binding adenosine nucleotides degradation I Mismatch_repair Purine_metabolism Lysosome hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000721 | chitin catabolic process cell wall macromolecule catabolic process chitinase activity Carbohydrate_digestion_and_absorption hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000726 | E1: ThiF guanyl-nucleotide exchange factor activity Ran_GTPase_binding small protein activating enzyme activity small GTPase mediated signal transduction intracellular protein transport | details |
| CFinderADM000729 | helicase activity Herpes_simplex_infection | details |
| CFinderADM000748 | SOCS/VHL/BC-box: 3_box phosphatidylinositol metabolic process kinesin complex microtubule-based movement 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Mismatch_repair | details |
| CFinderADM000771 | aldehyde-lyase_activity phosphatidylinositol-mediated signaling phosphogluconate dehydrogenase (decarboxylating) activity phosphatidylinositol phosphorylation solute:hydrogen antiporter activity NAD binding cation transport D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis Quorum_sensing Phosphatidylinositol_signaling_system | details |
| CFinderADM000797 | lipid catabolic process Transcription regulator: SWI/SNF-BAF60b triacylglycerol degradation Vitamin_digestion_and_absorption | details |
| CFinderADM000798 | SOCS/VHL/BC-box: 3_box phosphatidylinositol metabolic process phosphatidylinositol phosphate kinase activity D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis Choline_metabolism_in_cancer | details |
| CFinderADM000801 | glucosylceramidase activity sphingolipid metabolic process 6-phosphofructokinase activity drug transmembrane transporter activity antiporter activity xyloglucan biosynthesis glycolysis IV (plant cytosol) Fructose_and_mannose_metabolism Lysosome hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000812 | Cdc73/Paf1 complex histone modification Transcription regulator: PHD regulation of transcription, DNA-dependent single-stranded DNA binding phosphotransferase activity, alcohol group as acceptor | details |
| CFinderADM000816 | regulation of sequence-specific DNA binding transcription factor activity PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII E1: ThiF guanyl-nucleotide exchange factor activity small protein activating enzyme activity amino acid transmembrane transporter activity amino_acid_transmembrane_transport ion transport small GTPase mediated signal transduction transcription initiation, DNA-dependent Platinum_drug_resistance | details |
| CFinderADM000956 | glycopeptide_alpha-N-acetylgalactosaminidase_activity oxidoreductase activity, acting on the CH-CH group of donors Transcription regulator: C3H sucrose degradation III (sucrose invertase) Steroid_hormone_biosynthesis hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM001042 | vesicle-mediated transport intracellular protein transport intra-Golgi vesicle-mediated transport protein N-linked glycosylation regulation of ARF protein signal transduction clathrin adaptor complex oligosaccharyltransferase complex Golgi_transport_complex ARF guanyl-nucleotide exchange factor activity membrane coat Protein_processing_in_endoplasmic_reticulum Herpes_simplex_infection | details |
| CFinderADM001048 | Ran_GTPase_binding intracellular protein transport | details |
| CFinderADM001181 | Transcription factor: C2C2-LSD cis-Golgi network glycopeptide_alpha-N-acetylgalactosaminidase_activity intracellular protein transport methylerythritol phosphate pathway II methylerythritol phosphate pathway I mevalonate pathway I trans, trans-farnesyl diphosphate biosynthesis sucrose degradation III (sucrose invertase) Terpenoid_backbone_biosynthesis hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
Expression profiles
 Show details about module gene expression profiling |