CFinderADM000798 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| SOCS/VHL/BC-box: 3_box | 0.003450206 | gene family |
| phosphatidylinositol metabolic process | 0.003622455 | GO:0046488 |
| phosphatidylinositol phosphate kinase activity | 0.003622455 | GO:0016307 |
| D-myo-inositol (1,4,5)-trisphosphate biosynthesis | 0.014453369 | plantCyc |
| 3-phosphoinositide biosynthesis | 0.014453369 | plantCyc |
| Choline_metabolism_in_cancer | 0.014594944 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g100410.2 | Iron-sulphur cluster biosynthesis family protein | AT5G03905 (4.00E-49) |
| Solyc02g093160.2 | Plant protein of unknown function (DUF869) | AT2G23360 (3.00E-132) |
| Solyc03g097190.2 | Plant protein of unknown function (DUF827) | AT5G16730 (3.00E-81) |
| Solyc03g122040.2 | AT3G14172 (6.00E-99) | |
| Solyc04g072630.2 | AT1G22060 (0) | |
| Solyc11g013180.1 | phosphatidylinositol-4-phosphate 5-kinase 1 | AT1G77740 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000343 | mediator complex Transcription regulator: PHD RNA_polymerase_II_transcription_cofactor_activity regulation of transcription from RNA polymerase II promoter MicroRNAs_in_cancer | details |
| CFinderADM000373 | Golgi to plasma membrane transport response to hormone stimulus Transcription regulator: ARF exocyst formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000401 | phosphoenolpyruvate carboxylase activity malate_dehydrogenase_(decarboxylating)_(NAD+)_activity carbon fixation tricarboxylic acid cycle solute:hydrogen antiporter activity cation transport CO2 fixation into oxaloacetate (anapleurotic) glutamine biosynthesis III TCA cycle variation V (plant) gluconeogenesis I Methane_metabolism Carbon_fixation_in_photosynthetic_organisms | details |
| CFinderADM000451 | cytoskeleton organization phosphatidylinositol metabolic process Transcription regulator: SNF2 phosphatidylinositol phosphate kinase activity microtubule binding signal transduction 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Choline_metabolism_in_cancer | details |
| CFinderADM000488 | mannose metabolic process mannosidase activity alpha-mannosidase activity protein phosphatase type 2A complex protein phosphatase type 2A regulator activity ionotropic glutamate receptor activity galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity membrane zinc ion binding CDP-diacylglycerol biosynthesis II xylan biosynthesis CDP-diacylglycerol biosynthesis I Lysosome Phosphatidylinositol_signaling_system formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000489 | IMP salvage deaminase activity AMP deaminase activity ionotropic glutamate receptor activity CDP-diacylglycerol biosynthesis II CDP-diacylglycerol biosynthesis I adenosine nucleotides degradation I Purine_metabolism Phosphatidylinositol_signaling_system | details |
| CFinderADM000569 | vesicle-mediated transport intracellular protein transport regulation of ARF protein signal transduction clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit membrane coat ARF guanyl-nucleotide exchange factor activity structural molecule activity | details |
| CFinderADM000585 | PPC:2.1.3: CTR1/EDR1 Kinase ionotropic glutamate receptor activity amino acid binding Two-component_system beta-Lactam_resistance | details |
| CFinderADM000615 | RNA methylation Transcription factor: C2H2 RNA methyltransferase activity protein folding transcription, DNA-dependent Epstein-Barr_virus_infection | details |
| CFinderADM000656 | Cdc73/Paf1 complex histone modification Epstein-Barr_virus_infection | details |
| CFinderADM000679 | PPC:2.1.3: CTR1/EDR1 Kinase IMP salvage mannose metabolic process mannosidase activity deaminase activity alpha-mannosidase activity AMP deaminase activity mismatched DNA binding adenosine nucleotides degradation I Mismatch_repair Purine_metabolism Lysosome hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000721 | chitin catabolic process cell wall macromolecule catabolic process chitinase activity Carbohydrate_digestion_and_absorption hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000729 | helicase activity Herpes_simplex_infection | details |
| CFinderADM000748 | SOCS/VHL/BC-box: 3_box phosphatidylinositol metabolic process kinesin complex microtubule-based movement 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Mismatch_repair | details |
| CFinderADM000771 | aldehyde-lyase_activity phosphatidylinositol-mediated signaling phosphogluconate dehydrogenase (decarboxylating) activity phosphatidylinositol phosphorylation solute:hydrogen antiporter activity NAD binding cation transport D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis Quorum_sensing Phosphatidylinositol_signaling_system | details |
| CFinderADM000797 | lipid catabolic process Transcription regulator: SWI/SNF-BAF60b triacylglycerol degradation Vitamin_digestion_and_absorption | details |
| CFinderADM000801 | glucosylceramidase activity sphingolipid metabolic process 6-phosphofructokinase activity drug transmembrane transporter activity antiporter activity xyloglucan biosynthesis glycolysis IV (plant cytosol) Fructose_and_mannose_metabolism Lysosome hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000812 | Cdc73/Paf1 complex histone modification Transcription regulator: PHD regulation of transcription, DNA-dependent single-stranded DNA binding phosphotransferase activity, alcohol group as acceptor | details |
| CFinderADM000877 | HAUS_complex cytoskeleton microtubule organizing center spindle pole centrosome organization spindle_assembly microtubule cytoskeleton organization microtubule-based movement kinesin complex Lysosome hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 | details |
| CFinderADM000956 | glycopeptide_alpha-N-acetylgalactosaminidase_activity oxidoreductase activity, acting on the CH-CH group of donors Transcription regulator: C3H sucrose degradation III (sucrose invertase) Steroid_hormone_biosynthesis hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM001181 | Transcription factor: C2C2-LSD cis-Golgi network glycopeptide_alpha-N-acetylgalactosaminidase_activity intracellular protein transport methylerythritol phosphate pathway II methylerythritol phosphate pathway I mevalonate pathway I trans, trans-farnesyl diphosphate biosynthesis sucrose degradation III (sucrose invertase) Terpenoid_backbone_biosynthesis hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
Expression profiles
 Show details about module gene expression profiling |