CFinderADM000725 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| retromer complex | 0.00302193 | GO:0030904 |
| ADP-dependent NAD(P)H-hydrate dehydratase activity | 0.00876299 | GO:0052855 |
| retrograde transport, endosome to Golgi | 0.011749921 | GO:0042147 |
| DNA replication | 0.025651386 | GO:0006260 |
| protein transport | 0.025651386 | GO:0015031 |
| DNA-directed DNA polymerase activity | 0.028452673 | GO:0003887 |
| protein transporter activity | 0.04080223 | GO:0008565 |
| NADH repair | 0.000805918 | plantCyc |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g056720.2 | small and basic intrinsic protein 2;1 | AT3G56950 (1.00E-67) |
| Solyc01g079860.2 | pfkB-like carbohydrate kinase family protein | AT5G19150 (7.00E-135) |
| Solyc03g063340.2 | DNA polymerase delta small subunit | AT2G42120 (0) |
| Solyc07g064490.2 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | AT5G54890 (1.00E-135) |
| Solyc08g007370.2 | RNA binding;abscisic acid binding | AT2G47310 (2.00E-63) |
| Solyc11g013370.1 | histone mono-ubiquitination 1 | AT2G44950 (0) |
| Solyc12g089340.1 | VPS35 homolog B | AT1G75850 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000481 | vesicle-mediated transport E3 adaptor: DWD retromer complex intracellular protein transport retrograde transport, endosome to Golgi | details |
| CFinderADM000581 | retromer complex GTP_cyclohydrolase_I_activity isocitrate lyase activity tetrahydrofolate_biosynthetic_process proton-transporting ATP synthase complex, catalytic core F(1) retrograde transport, endosome to Golgi protein transporter activity cation binding catalytic activity proton-transporting ATPase activity, rotational mechanism hydrogen ion transporting ATP synthase activity, rotational mechanism 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I tetrahydrofolate biosynthesis II valine degradation I very long chain fatty acid biosynthesis I Folate_biosynthesis hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 adenosine ribonucleotides de novo biosynthesis | details |
| CFinderADM000857 | retromer complex retrograde transport, endosome to Golgi protein transport protein transporter activity | details |
| CFinderADM000896 | Transcription factor: C2C2-LSD homoserine biosynthesis trehalose biosynthesis VI methylerythritol phosphate pathway II D-serine degradation methylerythritol phosphate pathway I lysine biosynthesis VI thiosulfate disproportionation III (rhodanese) trans, trans-farnesyl diphosphate biosynthesis serine racemization mevalonate pathway I formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000908 | Transcription factor: TUB plant sterol biosynthesis unsaturated, even numbered fatty acid β-oxidation fatty acid β-oxidation II (peroxisome) methyl ketone biosynthesis very long chain fatty acid biosynthesis II Steroid_biosynthesis PPAR_signaling_pathway | details |
| CFinderADM000910 | retromer complex chromatin remodeling retrograde transport, endosome to Golgi Ino80_complex phosphoric diester hydrolase activity protein transporter activity protein transport Fanconi_anemia_pathway | details |
| CFinderADM000911 | Ino80_complex electron-transferring-flavoprotein dehydrogenase activity chromatin remodeling phosphatidylinositol binding lysine degradation II beta-Alanine_metabolism | details |
| CFinderADM000912 | retromer complex Ino80_complex chromatin remodeling retrograde transport, endosome to Golgi phosphatidylinositol binding protein transport protein transporter activity | details |
| CFinderADM000936 | ammonium_transport histidine biosynthetic process tRNA aminoacylation ammonium_transmembrane_transport membrane ammonium transmembrane transporter activity ligase activity, forming aminoacyl-tRNA and related compounds tRNA aminoacylation for protein translation histidine biosynthesis pyridine nucleotide cycling (plants) tRNA charging Oxytocin_signaling_pathway Aminoacyl-tRNA_biosynthesis Peroxisome | details |
| CFinderADM001003 | response to metal ion ADP-dependent NAD(P)H-hydrate dehydratase activity isocitrate lyase activity Transcription factor: M-TYPE proton-transporting ATP synthase complex, catalytic core F(1) hydrogen ion transporting ATP synthase activity, rotational mechanism proton-transporting ATPase activity, rotational mechanism ATP synthesis coupled proton transport carboxylic acid metabolic process NADH repair adenosine ribonucleotides de novo biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |