CFinderADM000872 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| structural molecule activity | 0.000282093 | GO:0005198 |
| vesicle-mediated transport | 0.002532549 | GO:0016192 |
| intracellular protein transport | 0.002532549 | GO:0006886 |
| PPC:5.1.1: Other Kinase | 0.005223322 | gene family |
| clathrin coat of trans-Golgi network vesicle | 0.006959419 | GO:0030130 |
| clathrin coat of coated pit | 0.006959419 | GO:0030132 |
| PPC:2.1.4: GmPK6/AtMRK1 Family | 0.010433121 | gene family |
| membrane coat | 0.011001652 | GO:0030117 |
| phosphatidylinositol metabolic process | 0.02523337 | GO:0046488 |
| 3-phosphoinositide biosynthesis | 0.017593011 | plantCyc |
| Regulation_of_actin_cytoskeleton | 0.009487385 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g074010.2 | Protein kinase superfamily protein | AT2G32850 (0) |
| Solyc01g098870.2 | AT1G54920 (3.00E-61) | |
| Solyc02g031910.2 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | AT2G35050 (1.00E-138) |
| Solyc02g061980.2 | winged-helix DNA-binding transcription factor family protein | AT4G35890 (2.00E-43) |
| Solyc03g120270.2 | Coatomer, beta\' subunit | AT1G52360 (0) |
| Solyc05g008200.2 | FORMS APLOID AND BINUCLEATE CELLS 1C | AT1G71010 (0) |
| Solyc05g052510.2 | Clathrin, heavy chain | AT3G11130 (0) |
| Solyc06g054540.2 | CHY-type/CTCHY-type/RING-type Zinc finger protein | AT5G18650 (3.00E-134) |
| Solyc07g042380.2 | ARM repeat superfamily protein | AT2G34357 (0) |
| Solyc07g063440.2 | CLUB | AT5G54440 (0) |
| Solyc09g018960.2 | Chaperone DnaJ-domain superfamily protein | AT4G12780 (2.00E-84) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000352 | lipoate biosynthetic process cytoskeleton organization lipoate synthase activity 4 iron, 4 sulfur cluster binding protein glycosylation galactosyltransferase activity actin binding iron-sulfur cluster binding protein ubiquitination lipoate biosynthesis and incorporation I lipoate biosynthesis and incorporation II Lipoic_acid_metabolism Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000671 | protein glycosylation eukaryotic translation initiation factor 3 complex membrane coat sialyltransferase activity translation_initiation_factor_binding structural molecule activity potassium ion transmembrane transporter activity transferase activity, transferring acyl groups acetylglucosaminyltransferase activity translation initiation factor activity pyruvate decarboxylation to acetyl CoA Glycosphingolipid_biosynthesis_-_ganglio_series Various_types_of_N-glycan_biosynthesis Pyruvate_metabolism Protein_processing_in_endoplasmic_reticulum formation of glycosidic bonds, GlycosylTransferases: GTnc formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000704 | PPC:2.1.4: GmPK6/AtMRK1 Family myosin complex protein ubiquitination | details |
| CFinderADM000852 | membrane coat sialyltransferase activity transferase activity, transferring acyl groups GTPase activator activity structural molecule activity retrograde transport, endosome to Golgi cytoplasm pyruvate decarboxylation to acetyl CoA Glycosphingolipid_biosynthesis_-_ganglio_series Protein_processing_in_endoplasmic_reticulum Pyruvate_metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000874 | PPC:5.1.1: Other Kinase COPII vesicle coat nuclear pore ER to Golgi vesicle-mediated transport protein phosphorylation intracellular protein transport | details |
| CFinderADM000905 | protein_prenylation protein prenyltransferase activity Protein_processing_in_endoplasmic_reticulum hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM000986 | E3: UBR-box DUB: USP xylogalacturonan biosynthesis Protein_digestion_and_absorption formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001063 | hydrolase activity Transcription regulator: Jumonji amino_acid_transmembrane_transport amino acid transmembrane transporter activity γ-glutamyl cycle Arginine_biosynthesis Glutathione_metabolism | details |
| CFinderADM001065 | DUB: JAMM thioredoxin pathway Selenocompound_metabolism Amino_sugar_and_nucleotide_sugar_metabolism | details |
| CFinderADM001156 | DUB: JAMM protein ubiquitination Herpes_simplex_infection | details |
| CFinderADM001177 | membrane coat sialyltransferase activity structural molecule activity DUB: USP protein ubiquitination vesicle-mediated transport protein glycosylation intracellular protein transport Glycosphingolipid_biosynthesis_-_ganglio_series Protein_processing_in_endoplasmic_reticulum formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
| CFinderADM001214 | respiratory electron transport chain mitochondrial inner membrane oxidoreductase activity, acting on NADH or NADPH protein ubiquitination Non-alcoholic_fatty_liver_disease_(NAFLD) | details |
| CFinderADM001263 | structural molecule activity intracellular protein transport vesicle-mediated transport vesicle docking Golgi vesicle transport malate_dehydrogenase_(decarboxylating)_(NAD+)_activity clathrin coat of coated pit COPI vesicle coat clathrin coat of trans-Golgi network vesicle membrane coat exocytosis endoplasmic reticulum NAD binding TCA cycle variation V (plant) gluconeogenesis I Carbon_fixation_in_photosynthetic_organisms formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001298 | plant sterol biosynthesis Protein_processing_in_endoplasmic_reticulum Steroid_biosynthesis Alzheimer's_disease hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 | details |
Expression profiles
 Show details about module gene expression profiling |