CFinderADM001001 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| Transcription factor: E2F-DP | 0.001553822 | gene family |
| transcription factor complex | 0.004661467 | GO:0005667 |
| ATP-dependent_5'-3'_DNA_helicase_activity | 0.007887048 | GO:0043141 |
| protein_peptidyl-prolyl_isomerization | 0.032226935 | GO:0000413 |
| peptidyl-prolyl cis-trans isomerase activity | 0.04031362 | GO:0003755 |
| DNA helicase activity | 0.043836804 | GO:0003678 |
| protein folding | 0.04950859 | GO:0006457 |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g007760.2 | E2F transcription factor 3 | AT2G36010 (8.00E-136) |
| Solyc01g090470.2 | rRNA processing protein-related | AT5G61330 (6.00E-113) |
| Solyc04g011500.2 | actin-11 | AT3G12110 (0) |
| Solyc09g065720.2 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | AT3G63400 (3.00E-72) |
| Solyc11g069370.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT5G22330 (0) |
| Solyc12g037980.1 | actin-related protein 4 | AT1G18450 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000016 | transmembrane transport membrane integral to membrane pectate lyase activity cation transport solute:hydrogen antiporter activity protein phosphorylation protein kinase activity exocytosis phospholipid binding response to stress vesicle docking enzyme inhibitor activity PPC:5.2.1: Other Kinase Transcription factor: LIM nutrient reservoir activity cell wall transferase activity, transferring glycosyl groups cell wall modification pectinesterase activity Pentose_and_glucuronate_interconversions non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | details |
| CFinderADM000118 | E3 adaptor: DWD nuclear pore small-subunit processome nucleus ribosome biogenesis rRNA processing tRNA aminoacylation for protein translation DNA recombination transcription, DNA-dependent DNA-directed RNA polymerase activity tRNA charging Epstein-Barr_virus_infection | details |
| CFinderADM000309 | integral to nuclear inner membrane ATP-dependent_5'-3'_DNA_helicase_activity protein_peptidyl-prolyl_isomerization protein folding peptidyl-prolyl cis-trans isomerase activity DNA helicase activity | details |
| CFinderADM000347 | integral to Golgi membrane intra-Golgi vesicle-mediated transport E3 adaptor: Cullin ubiquitin protein ligase binding ubiquitin-dependent protein catabolic process | details |
| CFinderADM000355 | tRNA_guanylyltransferase_activity tRNA modification Ino80_complex magnesium ion binding | details |
| CFinderADM000407 | poly(A)+ mRNA export from nucleus nuclear pore E3: U-box protein_peptidyl-prolyl_isomerization protein folding peptidyl-prolyl cis-trans isomerase activity Cationic_antimicrobial_peptide_(CAMP)_resistance | details |
| CFinderADM000419 | DNA-directed DNA polymerase activity transcription, DNA-dependent DNA binding Platinum_drug_resistance Herpes_simplex_infection | details |
| CFinderADM000445 | histone_lysine_methylation Transcription regulator: SET DUB: ULP histone-lysine N-methyltransferase activity histone_binding MicroRNAs_in_cancer Wnt_signaling_pathway | details |
| CFinderADM000490 | protein prenyltransferase activity transcription_corepressor_activity protein_prenylation transcription, DNA-dependent Terpenoid_backbone_biosynthesis | details |
| CFinderADM000493 | ubiquitin-specific_protease_activity cellular amino acid metabolic process DUB: USP glutamate biosynthesis III Arginine_biosynthesis | details |
| CFinderADM000494 | retromer complex retrograde transport, endosome to Golgi microtubule protein transport microtubule-based process Transcription regulator: C3H Nicotinate_and_nicotinamide_metabolism | details |
| CFinderADM000549 | regulation of transcription from RNA polymerase III promoter ATP-dependent_5'-3'_DNA_helicase_activity protein_peptidyl-prolyl_isomerization | details |
| CFinderADM000574 | Transcription factor: E2F-DP transcription factor complex triacylglycerol degradation Retrograde_endocannabinoid_signaling | details |
| CFinderADM000700 | ubiquitin-dependent protein catabolic process F-actin capping protein complex ubiquitin ligase complex barbed-end_actin_filament_capping ubiquitin-ubiquitin ligase activity exocyst ubiquitin protein ligase binding E3 adaptor: Cullin exocytosis E3: U-box protein ubiquitination ubiquitin-protein ligase activity | details |
| CFinderADM000753 | GTPase activity GTP binding retromer complex retrograde transport, endosome to Golgi exocyst protein transporter activity protein transport exocytosis | details |
| CFinderADM000754 | retromer complex retrograde transport, endosome to Golgi exocyst exocytosis protein transport protein transporter activity GTPase activity | details |
| CFinderADM000761 | retrograde transport, endosome to Golgi nucleus cytoplasm phosphopyruvate hydratase complex 1,3-beta-D-glucan synthase complex retromer complex Cdc73/Paf1 complex glutaminyl-tRNA aminoacylation Alzheimer's_disease | details |
| CFinderADM000762 | tRNA aminoacylation for protein translation Transcription factor: BSD aminoacyl-tRNA ligase activity nucleotide binding glutaminyl-tRNA aminoacylation glutamine-tRNA ligase activity core TFIIH complex E1: ThiF tRNA binding DNA topoisomerase (ATP-hydrolyzing) activity ligase activity, forming aminoacyl-tRNA and related compounds tRNA aminoacylation nucleotide-excision repair DNA topological change small protein activating enzyme activity ATP binding tRNA charging Aminoacyl-tRNA_biosynthesis | details |
| CFinderADM000866 | metalloexopeptidase activity aminopeptidase activity unfolded protein binding E3 adaptor: DWD cellular amino acid metabolic process glutamate biosynthesis III Arginine_biosynthesis | details |
| CFinderADM000892 | metalloexopeptidase activity E3 adaptor: Cullin aminopeptidase activity ubiquitin protein ligase binding cellular amino acid metabolic process glutamate biosynthesis III Arginine_biosynthesis | details |
| CFinderADM000906 | transferase activity, transferring acyl groups calcium ion binding 2-oxoglutarate decarboxylation to succinyl-CoA Lysine_degradation | details |
| CFinderADM000925 | protein_peptidyl-prolyl_isomerization peptidyl-prolyl cis-trans isomerase activity protein folding mRNA_surveillance_pathway Cationic_antimicrobial_peptide_(CAMP)_resistance | details |
| CFinderADM000929 | gene silencing by RNA DUB: ULP RNA processing Wnt_signaling_pathway | details |
| CFinderADM000930 | NuA4_histone_acetyltransferase_complex Piccolo_NuA4_histone_acetyltransferase_complex regulation of transcription from RNA polymerase II promoter DUB: ULP Wnt_signaling_pathway | details |
| CFinderADM000944 | details | |
| CFinderADM000975 | nuclear chromosome | details |
| CFinderADM000994 | DUB: USP E3: HECT protein glycosylation Epstein-Barr_virus_infection Various_types_of_N-glycan_biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001007 | E3: HECT DNA recombination four-way junction helicase activity protein binding DNA repair Taste_transduction | details |
| CFinderADM001024 | E3 adaptor: DWD | details |
| CFinderADM001122 | DNA topological change DNA topoisomerase type I activity DNA topoisomerase (ATP-hydrolyzing) activity chromosome Ino80_complex Fanconi_anemia_pathway | details |
| CFinderADM001127 | details | |
| CFinderADM001148 | Transcription regulator: SET histone_lysine_methylation SRP-dependent cotranslational protein targeting to membrane exocytosis signal recognition particle exocyst histone_binding histone-lysine N-methyltransferase activity 7S RNA binding Quorum_sensing MicroRNAs_in_cancer | details |
| CFinderADM001237 | protein_peptidyl-prolyl_isomerization protein folding peptidyl-prolyl cis-trans isomerase activity mRNA_surveillance_pathway Cationic_antimicrobial_peptide_(CAMP)_resistance Herpes_simplex_infection | details |
| CFinderADM001260 | nucleus E3 adaptor: DDB1 mRNA processing regulation of transcription, DNA-dependent calcium ion binding | details |
| CFinderADM001310 | phenylalanyl-tRNA aminoacylation nuclear pore phenylalanine-tRNA ligase activity tRNA charging Aminoacyl-tRNA_biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |