TissueCFM000400 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| adenylate kinase activity | 0.003598572 | GO:0004017 |
| nucleobase-containing compound metabolic process | 0.005602146 | GO:0006139 |
| nucleobase-containing compound kinase activity | 0.006791825 | GO:0019205 |
| transferase activity, transferring alkyl or aryl (other than methyl) groups | 0.006791825 | GO:0016765 |
| chorismate biosynthesis from 3-dehydroquinate | 0.011076583 | plantCyc |
| valine degradation I | 0.011856838 | plantCyc |
| adenosine ribonucleotides de novo biosynthesis | 0.016043935 | plantCyc |
| Phenylalanine, tyrosine and tryptophan biosynthesis | 0.0131591 | KEGG |
| beta-Alanine metabolism | 0.0131591 | KEGG |
| Ribosome biogenesis in eukaryotes | 0.0131591 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g079610.2 | DNAJ heat shock family protein | AT3G62600 (1.00E-154) |
| Solyc01g091190.2 | RNA 3\'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | AT2G45300 (0) |
| Solyc05g014980.2 | adenylate kinase 1 | AT5G63400 (5.00E-117) |
| Solyc10g086410.2 | heat shock cognate protein 70-1 | AT3G12580 (0) |
| Solyc12g011160.1 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | AT1G06550 (1.00E-151) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000394 | adenylate kinase activity nucleobase-containing compound kinase activity nucleobase-containing compound metabolic process Cytochrome_P450, Cytochrome P450: CYP98A Transcription_related, Transcription regulator: HB umbelliferone biosynthesis adenosine ribonucleotides de novo biosynthesis scopoletin biosynthesis Ribosome biogenesis in eukaryotes Fat digestion and absorption | details |
| TissueCFM000395 | 3-dehydroquinate dehydratase activity shikimate 3-dehydrogenase (NADP+) activity adenylate kinase activity nucleobase-containing compound kinase activity transferase activity, transferring alkyl or aryl (other than methyl) groups nucleobase-containing compound metabolic process chorismate biosynthesis from 3-dehydroquinate tyrosine biosynthesis II threonine biosynthesis isoleucine biosynthesis I (from threonine) aspartate degradation I phenylalanine biosynthesis II aspartate biosynthesis phenylpropanoid biosynthesis, initial reactions aspartate degradation II trans-cinnamoyl-CoA biosynthesis adenosine ribonucleotides de novo biosynthesis suberin monomers biosynthesis Phenylalanine, tyrosine and tryptophan biosynthesis Tropane, piperidine and pyridine alkaloid biosynthesis Ribosome biogenesis in eukaryotes Phenylpropanoid biosynthesis Fat digestion and absorption | details |
| TissueCFM000401 | 3-dehydroquinate dehydratase activity shikimate 3-dehydrogenase (NADP+) activity adenylate kinase activity nucleobase-containing compound kinase activity transferase activity, transferring alkyl or aryl (other than methyl) groups nucleobase-containing compound metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc chorismate biosynthesis from 3-dehydroquinate Phenylalanine, tyrosine and tryptophan biosynthesis Ribosome biogenesis in eukaryotes Vibrio cholerae infection | details |
| TissueCFM000422 | endoplasmic reticulum protein glycosylation cell redox homeostasis membrane unfolded protein binding protein folding calcium ion binding integral to membrane COPII vesicle coat 1,3-beta-D-glucan synthase complex carbohydrate derivative biosynthetic process UDP-glucose:glycoprotein_glucosyltransferase_activity protein_disulfide_isomerase_activity glutamine-fructose-6-phosphate transaminase (isomerizing) activity carbohydrate binding formation of glycosidic bonds, GlycosylTransferases: GTnc formation of glycosidic bonds, GlycosylTransferases: GTnc UDP-N-acetyl-D-glucosamine biosynthesis II 2-oxoglutarate decarboxylation to succinyl-CoA callose biosynthesis Protein processing in endoplasmic reticulum Vibrio cholerae infection hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TissueCFM000826 | endoplasmic reticulum protein_disulfide_isomerase_activity oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor unfolded protein binding calcium ion binding Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family valine degradation I beta-Alanine metabolism | details |
| TissueCFM000994 | actin cytoskeleton Arp2/3_protein_complex metabolic process posttranscriptional_gene_silencing_by_RNA oxoglutarate dehydrogenase (succinyl-transferring) activity cofactor binding tricarboxylic acid cycle Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization thiamine pyrophosphate binding oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor transcription cofactor activity tRNA processing Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family 2-oxoglutarate decarboxylation to succinyl-CoA TCA cycle II (plants and fungi) TCA cycle variation V (plant) glycine cleavage pyruvate decarboxylation to acetyl CoA glyoxylate cycle valine degradation I glutamine biosynthesis III 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Tryptophan metabolism Valine, leucine and isoleucine degradation beta-Alanine metabolism Carbon fixation pathways in prokaryotes | details |
Expression profiles
 Show details about module gene expression profiling |