TissueCFM000700 module
|
Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| nucleoside metabolic process | 0.003105632 | GO:0009116 |
| S-methyl-5'-thioadenosine degradation I | 0.000518165 | plantCyc |
| Cysteine and methionine metabolism | 0.023247024 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g111060.2 | methylthioadenosine nucleosidase 1 | AT4G34840 (9.00E-94) |
| Solyc03g095330.2 | ||
| Solyc04g055060.1 | ||
| Solyc05g026090.1 | hydrolases;protein serine/threonine phosphatases | |
| Solyc09g031590.2 | sorting nexin 2A | |
| Solyc10g074750.1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000178 | nucleoside metabolic process phosphatidylinositol_phosphate_phosphatase_activity zinc ion binding S-methyl-5'-thioadenosine degradation I Cysteine and methionine metabolism Phosphatidylinositol signaling system | details |
| TissueCFM000179 | nucleoside metabolic process S-methyl-5'-thioadenosine degradation I UDP-D-xylose biosynthesis UDP-α-D-glucuronate biosynthesis (from UDP-glucose) L-ascorbate biosynthesis V colanic acid building blocks biosynthesis L-ascorbate biosynthesis IV superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis UDP-sugars interconversion Cysteine and methionine metabolism Amino sugar and nucleotide sugar metabolism | details |
| TissueCFM000215 | nucleoside metabolic process S-methyl-5'-thioadenosine degradation I Cysteine and methionine metabolism | details |
| TissueCFM000225 | nucleoside metabolic process translation structural constituent of ribosome ribosome endoplasmic reticulum membrane S-methyl-5'-thioadenosine degradation I Cysteine and methionine metabolism | details |
| TissueCFM000276 | nucleoside metabolic process galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity ubiquitin protein ligase binding ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: Cullin S-methyl-5'-thioadenosine degradation I xylan biosynthesis Cysteine and methionine metabolism Amino sugar and nucleotide sugar metabolism | details |
| TissueCFM000356 | CTP synthase activity phosphatidylinositol_phosphate_phosphatase_activity pyrimidine nucleotide biosynthetic process nucleoside metabolic process UTP and CTP de novo biosynthesis glutamine degradation I UTP and CTP dephosphorylation II UTP and CTP dephosphorylation I pyrimidine ribonucleotides interconversion S-methyl-5'-thioadenosine degradation I Pyrimidine metabolism Phosphatidylinositol signaling system Cysteine and methionine metabolism | details |
| TissueCFM000415 | nucleoside metabolic process response_to_auxin S-methyl-5'-thioadenosine degradation I Cysteine and methionine metabolism | details |
| TissueCFM000861 | Non-homologous end-joining | details |
Expression profiles
 Show details about module gene expression profiling |