TissueCFM000736 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| chromosome, centromeric region | 0.004229972 | GO:0000775 |
| meiotic chromosome segregation | 0.005037421 | GO:0045132 |
| DNA-(apurinic or apyrimidinic site) lyase activity | 0.005130696 | GO:0003906 |
| hydrolase activity, hydrolyzing N-glycosyl compounds | 0.005130696 | GO:0016799 |
| nucleotide-excision repair | 0.010619869 | GO:0006289 |
| base-excision repair | 0.010619869 | GO:0006284 |
| damaged DNA binding | 0.020505067 | GO:0003684 |
| protein binding | 0.035987123 | GO:0005515 |
| Transcription_related, Transcription regulator: SNF2 | 0.037886102 | gene family |
| Base excision repair | 0.039782831 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g103570.2 | DNA-binding bromodomain-containing protein | AT1G58025 (2.00E-68) |
| Solyc02g062780.2 | chromatin remodeling 1 | AT5G66750 (0) |
| Solyc03g117510.2 | MUTM homolog-1 | AT1G52500 (1.00E-134) |
| Solyc08g078470.2 | SMAD/FHA domain-containing protein | AT4G14490 (5.00E-30) |
| Solyc09g061930.2 | transmembrane kinase-like 1 | AT3G24660 (0) |
| Solyc11g008090.1 | Shugoshin C terminus | |
| Solyc11g008670.1 | chromatin assembly factor-1 (FASCIATA1) (FAS1) | AT1G65470 (1.00E-99) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000282 | meiotic chromosome segregation kinetochore_assembly centromeric DNA binding kinetochore chromosome, centromeric region protein binding | details |
| TissueCFM000293 | kinetochore_assembly meiotic chromosome segregation centromeric DNA binding kinetochore transcription factor complex chromosome, centromeric region Transcription_related, Transcription factor: E2F-DP Transcription_related, Transcription factor: MYB | details |
| TissueCFM000691 | ATP-dependent DNA helicase activity ATP binding DNA binding kinesin complex hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides chromatin binding microtubule-based movement Ubiquitin_Proteasome_system, E3: RING Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 Viral carcinogenesis | details |
| TissueCFM001219 | ATP-dependent chromatin remodeling chromatin remodeling nucleosome binding microtubule-based movement ATP binding hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides chromatin binding kinesin complex Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 Tuberculosis | details |
| TissueCFM001254 | ATP-dependent chromatin remodeling chromosome organization chromatin remodeling ATP binding nucleosome binding chromosome hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides microtubule-based movement kinesin complex DNA binding microtubule motor activity microtubule binding Transcription_related, Transcription regulator: ARID Transcription_related, Transcription regulator: SNF2 Tuberculosis | details |
Expression profiles
 Show details about module gene expression profiling |