TissueCFM001052 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| thiamine biosynthetic process | 0.004749295 | GO:0009228 |
| thiamine-phosphate diphosphorylase activity | 0.004930044 | GO:0004789 |
| pseudouridine synthesis | 0.005536059 | GO:0001522 |
| RNA modification | 0.005536059 | GO:0009451 |
| pseudouridine synthase activity | 0.015597427 | GO:0009982 |
| hydroxymethylpyrimidine salvage | 0.003664467 | plantCyc |
| thiamin salvage IV (yeast) | 0.003664467 | plantCyc |
| 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) | 0.003664467 | plantCyc |
| 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis | 0.003664467 | plantCyc |
| thiamin diphosphate biosynthesis IV (eukaryotes) | 0.003664467 | plantCyc |
| thiamin salvage II | 0.004274719 | plantCyc |
| thiamin formation from pyrithiamine and oxythiamine (yeast) | 0.005233445 | plantCyc |
| putrescine biosynthesis II | 0.005952015 | plantCyc |
| putrescine biosynthesis IV | 0.006510482 | plantCyc |
| Thiamine metabolism | 0.006904088 | KEGG |
| Arginine and proline metabolism | 0.009477826 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g100400.2 | Pseudouridine synthase family protein | AT1G56345 (4.00E-89) |
| Solyc01g103950.2 | thiamin biosynthesis protein, putative | AT1G22940 (0) |
| Solyc05g026140.2 | Protein of unknown function, DUF647 | AT2G31190 (0) |
| Solyc07g015980.2 | ||
| Solyc11g007160.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | AT3G20930 (5.00E-107) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000704 | thiamine biosynthetic process thiamine-phosphate diphosphorylase activity Transcription_related, Transcription factor: GRAS thiamin diphosphate biosynthesis IV (eukaryotes) thiamin salvage IV (yeast) 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) hydroxymethylpyrimidine salvage 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) putrescine biosynthesis II putrescine biosynthesis IV Thiamine metabolism Arginine and proline metabolism | details |
| TissueCFM000713 | thiamine biosynthetic process thiamine-phosphate diphosphorylase activity thiamin diphosphate biosynthesis IV (eukaryotes) 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis hydroxymethylpyrimidine salvage thiamin salvage IV (yeast) thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) Thiamine metabolism | details |
| TissueCFM000714 | thiamine biosynthetic process thiamine-phosphate diphosphorylase activity thiamin diphosphate biosynthesis IV (eukaryotes) thiamin salvage IV (yeast) 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) hydroxymethylpyrimidine salvage 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) putrescine biosynthesis II putrescine biosynthesis IV Thiamine metabolism Arginine and proline metabolism | details |
| TissueCFM001257 | mitochondrion double-stranded DNA binding regulation of transcription, DNA-dependent Transcription_related, Transcription factor: mTERF putrescine biosynthesis IV putrescine biosynthesis II Arginine and proline metabolism | details |
| TissueCFM001400 | thiamine-phosphate diphosphorylase activity 4-alpha-glucanotransferase activity starch_binding thiamine biosynthetic process metalloendopeptidase activity hydroxymethylpyrimidine salvage 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) thiamin salvage IV (yeast) thiamin diphosphate biosynthesis IV (eukaryotes) 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) sucrose biosynthesis II Thiamine metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
Expression profiles
 Show details about module gene expression profiling |