TissueCFM000713 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| thiamine biosynthetic process | 0.001036105 | GO:0009228 |
| thiamine-phosphate diphosphorylase activity | 0.002849905 | GO:0004789 |
| thiamin diphosphate biosynthesis IV (eukaryotes) | 0.003134444 | plantCyc |
| 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) | 0.003134444 | plantCyc |
| 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis | 0.003134444 | plantCyc |
| hydroxymethylpyrimidine salvage | 0.003134444 | plantCyc |
| thiamin salvage IV (yeast) | 0.003134444 | plantCyc |
| thiamin salvage II | 0.003656325 | plantCyc |
| thiamin formation from pyrithiamine and oxythiamine (yeast) | 0.004476166 | plantCyc |
| Thiamine metabolism | 0.002760959 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g086850.2 | RAB GTPase homolog A4C | AT5G47960 (1.00E-97) |
| Solyc01g103950.2 | thiamin biosynthesis protein, putative | AT1G22940 (0) |
| Solyc02g065720.2 | RING/U-box superfamily protein | AT5G38895 (3.00E-60) |
| Solyc02g084550.2 | AT3G51100 (2.00E-45) | |
| Solyc04g008520.2 | chloroplast outer envelope protein 37 | AT2G43950 (7.00E-119) |
| Solyc08g066640.2 | YebC-related | AT2G25830 (2.00E-98) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000564 | D-aminoacyl-tRNA_deacylase_activity thiol oxidase activity tocopherol_cyclase_activity hydrolase activity, acting on ester bonds vitamin E biosynthesis (tocotrienols) vitamin E biosynthesis (tocotrienols) L-ascorbate biosynthesis I (L-galactose pathway) Ubiquinone and other terpenoid-quinone biosynthesis Ascorbate and aldarate metabolism | details |
| TissueCFM000704 | thiamine biosynthetic process thiamine-phosphate diphosphorylase activity Transcription_related, Transcription factor: GRAS thiamin diphosphate biosynthesis IV (eukaryotes) thiamin salvage IV (yeast) 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) hydroxymethylpyrimidine salvage 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) putrescine biosynthesis II putrescine biosynthesis IV Thiamine metabolism Arginine and proline metabolism | details |
| TissueCFM000714 | thiamine biosynthetic process thiamine-phosphate diphosphorylase activity thiamin diphosphate biosynthesis IV (eukaryotes) thiamin salvage IV (yeast) 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) hydroxymethylpyrimidine salvage 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) putrescine biosynthesis II putrescine biosynthesis IV Thiamine metabolism Arginine and proline metabolism | details |
| TissueCFM000717 | tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity nucleotide binding 4-alpha-glucanotransferase activity starch_binding ligase activity, forming aminoacyl-tRNA and related compounds RNA modification tRNA aminoacylation pseudouridine synthesis pseudouridine synthase activity Cytochrome_P450, Cytochrome P450: CYP97B formation of glycosidic bonds, GlycosylTransferases: GTnc tRNA charging lutein biosynthesis methylglyoxal degradation I sucrose biosynthesis II starch biosynthesis Aminoacyl-tRNA biosynthesis Starch and sucrose metabolism Pyruvate metabolism Bacterial invasion of epithelial cells hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TissueCFM000723 | proteasome core complex, alpha-subunit complex large ribosomal subunit proteasome core complex threonine-type endopeptidase activity endopeptidase activity protein_peptidyl-prolyl_isomerization proteolysis involved in cellular protein catabolic process peptidyl-prolyl cis-trans isomerase activity protein folding ubiquitin-dependent protein catabolic process Proteasome Cationic antimicrobial peptide (CAMP) resistance | details |
| TissueCFM000795 | glutathione biosynthetic process glutathione synthase activity glutathione biosynthesis Glutathione metabolism | details |
| TissueCFM000910 | nuclear mRNA splicing, via spliceosome mRNA processing spliceosomal complex snRNA_binding RNA processing Transcription_related, Transcription regulator: SWI/SNF-BAF60b Hippo signaling pathway -fly | details |
| TissueCFM000930 | threonine-type endopeptidase activity proteolysis involved in cellular protein catabolic process proteasome core complex endopeptidase activity proteasome core complex, alpha-subunit complex ubiquitin-dependent protein catabolic process vacuolar transport Proteasome | details |
| TissueCFM001032 | TCA cycle II (plants and fungi) TCA cycle variation V (plant) Carbon fixation pathways in prokaryotes | details |
| TissueCFM001052 | thiamine biosynthetic process thiamine-phosphate diphosphorylase activity pseudouridine synthesis RNA modification pseudouridine synthase activity hydroxymethylpyrimidine salvage thiamin salvage IV (yeast) 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis thiamin diphosphate biosynthesis IV (eukaryotes) thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) putrescine biosynthesis II putrescine biosynthesis IV Thiamine metabolism Arginine and proline metabolism | details |
| TissueCFM001075 | thymidine kinase activity transferase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD folate polyglutamylation glycine biosynthesis pyrimidine deoxyribonucleosides salvage 5-aminoimidazole ribonucleotide biosynthesis I photorespiration folate transformations II Antifolate resistance Drug metabolism - other enzymes | details |
| TissueCFM001136 | DNA replication | details |
| TissueCFM001233 | ribosome structural constituent of ribosome large ribosomal subunit translation protein_peptidyl-prolyl_isomerization peptidyl-prolyl cis-trans isomerase activity protein folding Cationic antimicrobial peptide (CAMP) resistance | details |
| TissueCFM001257 | mitochondrion double-stranded DNA binding regulation of transcription, DNA-dependent Transcription_related, Transcription factor: mTERF putrescine biosynthesis IV putrescine biosynthesis II Arginine and proline metabolism | details |
| TissueCFM001258 | asparagine biosynthetic process lysine biosynthetic process via diaminopimelate asparagine synthase (glutamine-hydrolyzing) activity dihydrodipicolinate reductase activity RNA methyltransferase activity RNA processing asparagine biosynthesis II asparagine biosynthesis I superpathway of asparagine biosynthesis lysine biosynthesis VI glutamine degradation I Monobactam biosynthesis Alanine, aspartate and glutamate metabolism | details |
| TissueCFM001272 | catalytic activity Transcription_related, Transcription regulator: SET leucine biosynthesis leucine degradation I Pantothenate and CoA biosynthesis MicroRNAs in cancer | details |
| TissueCFM001278 | ion transport amino_acid_transmembrane_transport amino acid transmembrane transporter activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 | details |
| TissueCFM001302 | starch_binding 4-alpha-glucanotransferase activity transferase activity, transferring acyl groups aminoacyl-tRNA ligase activity tRNA aminoacylation for protein translation nucleotide binding CDP-diacylglycerol biosynthesis I sucrose biosynthesis II tRNA charging triacylglycerol biosynthesis Aminoacyl-tRNA biosynthesis Fat digestion and absorption hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TissueCFM001400 | thiamine-phosphate diphosphorylase activity 4-alpha-glucanotransferase activity starch_binding thiamine biosynthetic process metalloendopeptidase activity hydroxymethylpyrimidine salvage 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) thiamin salvage IV (yeast) thiamin diphosphate biosynthesis IV (eukaryotes) 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) sucrose biosynthesis II Thiamine metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
Expression profiles
 Show details about module gene expression profiling |