TissueCFM001136 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| DNA replication | 0.01981499 | GO:0006260 |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g088570.2 | mitochondrial acyl carrier protein 1 | AT2G44620 (1.00E-44) |
| Solyc02g065720.2 | RING/U-box superfamily protein | AT5G38895 (3.00E-60) |
| Solyc07g006150.2 | Protein of unknown function (DUF788) | AT2G23940 (9.00E-64) |
| Solyc07g008660.2 | Ribosomal protein S16 family protein | AT5G56940 (6.00E-55) |
| Solyc09g091450.2 | polymerase delta 4 | AT1G09815 (1.00E-36) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000452 | peptidyl-prolyl cis-trans isomerase activity protein folding Cationic antimicrobial peptide (CAMP) resistance | details |
| TissueCFM000704 | thiamine biosynthetic process thiamine-phosphate diphosphorylase activity Transcription_related, Transcription factor: GRAS thiamin diphosphate biosynthesis IV (eukaryotes) thiamin salvage IV (yeast) 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) hydroxymethylpyrimidine salvage 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) putrescine biosynthesis II putrescine biosynthesis IV Thiamine metabolism Arginine and proline metabolism | details |
| TissueCFM000713 | thiamine biosynthetic process thiamine-phosphate diphosphorylase activity thiamin diphosphate biosynthesis IV (eukaryotes) 4-methyl-5(β-hydroxyethyl)thiazole salvage (yeast) 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis hydroxymethylpyrimidine salvage thiamin salvage IV (yeast) thiamin salvage II thiamin formation from pyrithiamine and oxythiamine (yeast) Thiamine metabolism | details |
| TissueCFM000723 | proteasome core complex, alpha-subunit complex large ribosomal subunit proteasome core complex threonine-type endopeptidase activity endopeptidase activity protein_peptidyl-prolyl_isomerization proteolysis involved in cellular protein catabolic process peptidyl-prolyl cis-trans isomerase activity protein folding ubiquitin-dependent protein catabolic process Proteasome Cationic antimicrobial peptide (CAMP) resistance | details |
| TissueCFM000804 | TCA cycle II (plants and fungi) triacylglycerol biosynthesis TCA cycle variation V (plant) Choline metabolism in cancer | details |
| TissueCFM000910 | nuclear mRNA splicing, via spliceosome mRNA processing spliceosomal complex snRNA_binding RNA processing Transcription_related, Transcription regulator: SWI/SNF-BAF60b Hippo signaling pathway -fly | details |
| TissueCFM000930 | threonine-type endopeptidase activity proteolysis involved in cellular protein catabolic process proteasome core complex endopeptidase activity proteasome core complex, alpha-subunit complex ubiquitin-dependent protein catabolic process vacuolar transport Proteasome | details |
| TissueCFM001233 | ribosome structural constituent of ribosome large ribosomal subunit translation protein_peptidyl-prolyl_isomerization peptidyl-prolyl cis-trans isomerase activity protein folding Cationic antimicrobial peptide (CAMP) resistance | details |
Expression profiles
 Show details about module gene expression profiling |