TissueCFM001079 module
|
Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase | 0.002590226 | gene family |
| Ubiquitin_Proteasome_system, E3: U-box | 0.027411753 | gene family |
| triacylglycerol biosynthesis | 0.018274502 | plantCyc |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g064680.2 | calcium ATPase 2 | AT4G37640 (0) |
| Solyc02g082550.2 | Protein kinase superfamily protein | AT4G35500 (2.00E-179) |
| Solyc02g089820.2 | acclimation of photosynthesis to environment | AT5G38660 (5.00E-59) |
| Solyc03g051970.2 | Phosphatidic acid phosphatase (PAP2) family protein | AT3G58490 (2.00E-152) |
| Solyc05g013910.2 | ||
| Solyc06g083150.2 | carboxyl terminus of HSC70-interacting protein | AT3G07370 (1.00E-111) |
| Solyc08g068350.2 | AT4G32750 (3.00E-96) | |
| Solyc10g084880.2 | Protein of unknown function (DUF668) | AT3G23160 (4.00E-73) |
| Solyc12g056550.1 | Protein of unknown function (DUF793) | AT1G18740 (5.00E-136) |
| Solyc12g088360.1 | ARM repeat superfamily protein | AT3G01400 (2.00E-124) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000684 | signal peptide processing signal peptidase complex peptidase activity Ubiquitin_Proteasome_system, DUB: JAMM Proteasome Quorum sensing | details |
| TissueCFM000689 | proteasome core complex proteolysis involved in cellular protein catabolic process threonine-type endopeptidase activity proteasome core complex, alpha-subunit complex endopeptidase activity ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, DUB: JAMM Proteasome | details |
| TissueCFM000722 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity pteridine-containing compound metabolic process proteasome core complex, alpha-subunit complex large ribosomal subunit proteasome core complex folic acid-containing compound biosynthetic process endopeptidase activity threonine-type endopeptidase activity proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process tetrahydrofolate biosynthesis 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I tetrahydrofolate biosynthesis II Proteasome Folate biosynthesis | details |
| TissueCFM000804 | TCA cycle II (plants and fungi) triacylglycerol biosynthesis TCA cycle variation V (plant) Choline metabolism in cancer | details |
| TissueCFM000857 | phospholipid binding methylglyoxal degradation I Pyruvate metabolism Non-alcoholic fatty liver disease (NAFLD) | details |
| TissueCFM001182 | proteolysis involved in cellular protein catabolic process proteasome core complex threonine-type endopeptidase activity proteasome core complex, alpha-subunit complex endopeptidase activity ubiquitin-dependent protein catabolic process calmodulin binding Proteasome Alzheimer's disease | details |
| TissueCFM001183 | proteolysis involved in cellular protein catabolic process proteasome core complex threonine-type endopeptidase activity proteasome core complex, alpha-subunit complex endopeptidase activity ubiquitin-dependent protein catabolic process protein N-linked glycosylation beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity calmodulin binding formation of glycosidic bonds, GlycosylTransferases: GTnc Proteasome N-Glycan biosynthesis Alzheimer's disease | details |
| TissueCFM001229 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity pteridine-containing compound metabolic process proteasome core complex, alpha-subunit complex proteasome core complex endopeptidase activity folic acid-containing compound biosynthetic process threonine-type endopeptidase activity mitochondrion double-stranded DNA binding proteolysis involved in cellular protein catabolic process Transcription_related, Transcription factor: mTERF tetrahydrofolate biosynthesis 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I tetrahydrofolate biosynthesis II triacylglycerol biosynthesis Proteasome Folate biosynthesis Choline metabolism in cancer | details |
Expression profiles
 Show details about module gene expression profiling |