TissueCFM001316 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| intracellular protein transport | 0.000244825 | GO:0006886 |
| protein domain specific binding | 0.006041773 | GO:0019904 |
| microtubule-based process | 0.006252147 | GO:0007017 |
| GTPase activity | 0.011625181 | GO:0003924 |
| microtubule | 0.013795459 | GO:0005874 |
| Peroxisome | 0.016768736 | KEGG |
| Nicotinate and nicotinamide metabolism | 0.016768736 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc04g081490.2 | tubulin beta-1 chain | AT1G75780 (0) |
| Solyc05g007970.2 | phytanoyl-CoA dioxygenase (PhyH) family protein | AT2G01490 (1.00E-120) |
| Solyc05g052310.2 | alpha-soluble NSF attachment protein 2 | AT3G56190 (2.00E-87) |
| Solyc09g025240.2 | ENTH/VHS/GAT family protein | AT1G06210 (2.00E-92) |
| Solyc12g057110.2 | general regulatory factor 2 | AT1G78300 (2.00E-128) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000259 | transcription factor TFIID complex kinetochore U4/U6_x_U5_tri-snRNP_complex Pantothenate and CoA biosynthesis | details |
| TissueCFM000353 | microtubule NADP_biosynthetic_process double-stranded RNA binding NAD+ kinase activity protein domain specific binding microtubule-based process GTPase activity NAD/NADH phosphorylation and dephosphorylation Nicotinate and nicotinamide metabolism | details |
| TissueCFM000391 | proton-transporting V-type ATPase, V0 domain alanyl-tRNA aminoacylation microtubule tRNA aminoacylation alanine-tRNA ligase activity microtubule-based process ligase activity, forming aminoacyl-tRNA and related compounds ATP hydrolysis coupled proton transport nucleic acid binding ATP binding helicase activity hydrogen ion transmembrane transporter activity GTPase activity tRNA charging | details |
| TissueCFM000416 | microtubule-based process microtubule transaminase activity acetylglucosaminyltransferase activity GTPase activity pyridoxal phosphate binding formation of glycosidic bonds, GlycosylTransferases: GTnc proline biosynthesis III arginine degradation VI (arginase 2 pathway) arginine degradation I (arginase pathway) L-Nδ-acetylornithine biosynthesis Nicotinate and nicotinamide metabolism Arginine and proline metabolism Hippo signaling pathway -fly | details |
| TissueCFM000470 | protein_import_into_peroxisome_matrix carbohydrate transport peroxisome organization Golgi membrane integral_component_of_peroxisomal_membrane sugar:hydrogen symporter activity protein domain specific binding asparagine degradation I Cyanoamino acid metabolism | details |
| TissueCFM000477 | protein domain specific binding | details |
| TissueCFM000509 | retromer complex microtubule Nicotinate and nicotinamide metabolism | details |
| TissueCFM000515 | microtubule-based process microtubule GTPase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box Nicotinate and nicotinamide metabolism Hippo signaling pathway -fly | details |
| TissueCFM000527 | protein domain specific binding Ino80_complex | details |
| TissueCFM000537 | tryptophanyl-tRNA aminoacylation tryptophan-tRNA ligase activity tRNA aminoacylation for protein translation tRNA charging | details |
| TissueCFM000572 | protein domain specific binding | details |
| TissueCFM000660 | protein_sumoylation cellular response to extracellular stimulus SUMO_transferase_activity cell growth microtubule-based process microtubule GTPase activity Transcription_related, Transcription regulator: PHD Nicotinate and nicotinamide metabolism | details |
| TissueCFM000674 | protein domain specific binding fatty acid biosynthetic process Transcription_related, Transcription regulator: HB Steroid biosynthesis | details |
| TissueCFM000698 | damaged DNA binding protein domain specific binding 3'-5' exonuclease activity nucleobase-containing compound metabolic process small GTPase mediated signal transduction DNA repair | details |
| TissueCFM000702 | protein domain specific binding spliceosomal complex nuclear mRNA splicing, via spliceosome | details |
| TissueCFM000870 | positive regulation of transcription elongation from RNA polymerase II promoter transcription initiation from RNA polymerase II promoter microtubule-based process microtubule metalloendopeptidase activity GTPase activity Ubiquitin_Proteasome_system, E2: UBC triacylglycerol biosynthesis Nicotinate and nicotinamide metabolism Choline metabolism in cancer | details |
| TissueCFM000929 | regulation of signal transduction microtubule microtubule-based process GTPase activity Nicotinate and nicotinamide metabolism | details |
| TissueCFM000949 | protein domain specific binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process protein phosphorylation Protein_kinases_phosphatases, PPC:5.2.1: Other Kinase uracil degradation I (reductive) | details |
| TissueCFM000957 | nucleotidyltransferase activity protein domain specific binding Ubiquitin_Proteasome_system, DUB: USP RNA degradation | details |
| TissueCFM001072 | proteasome_regulatory_particle,_base_subcomplex protein domain specific binding Transcription_related, Transcription factor: HSF Transcription_related, Transcription factor: G2-like | details |
| TissueCFM001077 | microtubule microtubule-based process Transcription_related, Transcription factor: bZIP Nicotinate and nicotinamide metabolism | details |
| TissueCFM001078 | small GTPase mediated signal transduction protein domain specific binding Herpes simplex infection | details |
| TissueCFM001127 | microtubule steroid biosynthetic process microtubule-based process 3-beta-hydroxy-delta5-steroid dehydrogenase activity GTPase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Transcription_related, Transcription factor: C2H2 superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) L-ascorbate biosynthesis V UDP-sugars interconversion Nicotinate and nicotinamide metabolism Amino sugar and nucleotide sugar metabolism | details |
| TissueCFM001139 | GTPase activity microtubule microtubule-based process triacylglycerol degradation Nicotinate and nicotinamide metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TissueCFM001266 | protein domain specific binding endoplasmic reticulum membrane | details |
| TissueCFM001276 | carbohydrate transport Golgi membrane sugar:hydrogen symporter activity protein domain specific binding | details |
| TissueCFM001335 | small GTPase mediated signal transduction protein domain specific binding Parkinson's disease | details |
| TissueCFM001351 | U4/U6_x_U5_tri-snRNP_complex spliceosomal_tri-snRNP_complex_assembly protein domain specific binding nuclear mRNA splicing, via spliceosome Transcription_related, Transcription factor: NF-YA | details |
| TissueCFM001362 | kinesin complex microtubule-based movement cell redox homeostasis microtubule motor activity microtubule binding Peroxisome | details |
| TissueCFM001461 | regulation of transcription, DNA-dependent protein domain specific binding histone_binding Transcription_related, Transcription factor: Alfin-like Ubiquitin_Proteasome_system, DUB: USP Transcription_related, Transcription factor: C2H2 | details |
Expression profiles
 Show details about module gene expression profiling |