TreatCFM000149 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| signal recognition particle | 0.000432335 | GO:0048500 |
| 7S RNA binding | 0.005366502 | GO:0008312 |
| SRP-dependent cotranslational protein targeting to membrane | 0.006119256 | GO:0006614 |
| S-adenosyl-L-methionine cycle II | 0.026698669 | plantCyc |
| methionine degradation I (to homocysteine) | 0.026698669 | plantCyc |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc00g111170.1 | SRP72 RNA-binding domain | |
| Solyc00g284510.1 | ||
| Solyc00g287330.1 | SRP72 RNA-binding domain | |
| Solyc01g016870.1 | plastid transcriptionally active 3 | |
| Solyc01g067450.1 | MuDR family transposase | |
| Solyc01g088340.1 | ||
| Solyc02g014640.1 | ||
| Solyc02g030520.1 | ||
| Solyc02g032590.1 | ||
| Solyc02g033050.1 | chromatin remodeling 31 | AT1G05490 (1.00E-131) |
| Solyc03g025100.1 | ||
| Solyc03g051660.1 | ||
| Solyc03g093320.1 | Chloroplast Ycf2;ATPase, AAA type, core | |
| Solyc03g095430.1 | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | |
| Solyc04g024820.1 | ||
| Solyc05g016650.1 | ||
| Solyc05g018840.1 | ||
| Solyc05g024300.1 | ||
| Solyc05g032820.1 | S-adenosyl-L-homocysteine hydrolase | AT4G13940 (8.00E-93) |
| Solyc05g053510.1 | Eukaryotic rpb5 RNA polymerase subunit family protein | AT3G22320 (6.00E-77) |
| Solyc06g036570.1 | ||
| Solyc07g017840.1 | ||
| Solyc07g021760.1 | ||
| Solyc07g032820.1 | PIF1 helicase | AT5G28780 (3.00E-39) |
| Solyc07g043380.1 | ||
| Solyc08g006130.1 | Domain of unknown function (DUF313) | |
| Solyc08g014140.1 | ||
| Solyc08g062550.1 | ||
| Solyc08g074920.1 | Eukaryotic aspartyl protease family protein | AT5G33340 (2.00E-101) |
| Solyc09g010310.1 | F-box family protein | |
| Solyc09g030510.1 | ||
| Solyc09g059000.1 | DNA/RNA polymerases superfamily protein | |
| Solyc09g066110.2 | ||
| Solyc10g049700.1 | ||
| Solyc10g049930.1 | Cyclase family protein | |
| Solyc10g075120.1 | Peroxidase superfamily protein | AT5G58400 (2.00E-52) |
| Solyc11g028190.1 | DNA/RNA polymerases superfamily protein | |
| Solyc11g039690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein | |
| Solyc11g042520.1 | ||
| Solyc11g042980.1 | ||
| Solyc11g050970.1 | MuDR family transposase | |
| Solyc12g011240.1 | myb-like HTH transcriptional regulator family protein | |
| Solyc12g021240.1 | MuDR family transposase | |
| Solyc12g035900.1 | Cytochrome C assembly protein | |
| Solyc12g036930.1 | ||
| Solyc12g049480.1 | ||
| Solyc12g056010.1 | senescence-associated gene 12 | AT3G49340 (8.00E-107) |
| Solyc12g088270.1 | serine carboxypeptidase-like 19 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000039 | Transcription_related, Transcription factor: LFY Transcription_related, Transcription factor: MYB-RELATED | details |
| TreatCFM000111 | details | |
| TreatCFM000566 | transcription, DNA-dependent UDP-D-galacturonate biosynthesis II (from D-galacturonate) | details |
Expression profiles
 Show details about module gene expression profiling |