TreatCFM000399 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| outer membrane | 0.00956507 | GO:0019867 |
| Arp2/3_protein_complex | 0.00956507 | GO:0005885 |
| ATP-dependent peptidase activity | 0.012400419 | GO:0004176 |
| aminoacyl-tRNA hydrolase activity | 0.012400419 | GO:0004045 |
| tetrahydrofolylpolyglutamate synthase activity | 0.012400419 | GO:0004326 |
| protein insertion into membrane | 0.012782412 | GO:0051205 |
| actin_filament_organization | 0.012782412 | GO:0007015 |
| Arp2/3_complex-mediated_actin_nucleation | 0.012782412 | GO:0034314 |
| folic acid-containing compound biosynthetic process | 0.012782412 | GO:0009396 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.008539876 | gene family |
| folate polyglutamylation | 0.032619183 | plantCyc |
| guanosine nucleotides degradation I | 0.032619183 | plantCyc |
| guanosine nucleotides degradation II | 0.032619183 | plantCyc |
| tetrahydrofolate biosynthesis II | 0.032619183 | plantCyc |
| pyrimidine salvage pathway | 0.034306357 | plantCyc |
| starch biosynthesis | 0.041102547 | plantCyc |
| adenosine nucleotides degradation I | 0.045923018 | plantCyc |
| Nicotinate and nicotinamide metabolism | 0.043234396 | KEGG |
| Antifolate resistance | 0.039930381 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g071040.2 | starch synthase 4 | AT4G18240 (0) |
| Solyc02g093030.2 | Peptidyl-tRNA hydrolase family protein | AT5G19830 (2.00E-50) |
| Solyc03g115720.2 | zinc finger (C3HC4-type RING finger) family protein | AT1G18660 (4.00E-168) |
| Solyc04g071280.1 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT3G61360 (4.00E-151) |
| Solyc05g013940.2 | Actin-like ATPase superfamily protein | AT1G13180 (0) |
| Solyc05g041860.2 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | |
| Solyc05g052920.2 | DHFS-FPGS homolog B | AT5G05980 (0) |
| Solyc09g098390.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | AT2G43370 (4.00E-88) |
| Solyc11g018740.1 | Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain | AT3G44370 (6.00E-65) |
| Solyc11g062070.1 | outer envelope protein of 80 kDa | AT5G19620 (0) |
| Solyc12g098830.1 | HAD-superfamily hydrolase, subfamily IG, 5\'-nucleotidase | AT5G48960 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000288 | 5'-3'_DNA_helicase_activity single-stranded DNA binding nucleotidyltransferase activity protein transport ornithine-citrulline shuttle guanosine nucleotides degradation I arginine biosynthesis II (acetyl cycle) glutamine degradation I pyrimidine salvage pathway UMP biosynthesis guanosine nucleotides degradation II arginine biosynthesis I (via L-ornithine) adenosine nucleotides degradation I RNA transport Alanine, aspartate and glutamate metabolism Nicotinate and nicotinamide metabolism | details |
| TreatCFM000366 | defense response integral to membrane formation of glycosidic bonds, GlycosylTransferases: GTnc starch biosynthesis MicroRNAs in cancer | details |
| TreatCFM000607 | tetrahydrofolylpolyglutamate synthase activity protein processing folic acid-containing compound biosynthetic process biosynthetic process tetrahydrofolate biosynthesis II folate polyglutamylation Antifolate resistance | details |
| TreatCFM000719 | tetrahydrofolylpolyglutamate synthase activity folic acid-containing compound biosynthetic process phosphotransferase activity, alcohol group as acceptor biosynthetic process phosphatidylglycerol biosynthesis I (plastidic) cardiolipin biosynthesis II phosphatidylglycerol biosynthesis II (non-plastidic) folate polyglutamylation tetrahydrofolate biosynthesis II Glutathione metabolism Glycerophospholipid metabolism Pentose and glucuronate interconversions Antifolate resistance | details |
| TreatCFM001184 | lipoate biosynthetic process RNA modification pseudouridine synthesis lipoate synthase activity 4 iron, 4 sulfur cluster binding pseudouridine synthase activity lipoate biosynthesis and incorporation II lipoate biosynthesis and incorporation I UMP biosynthesis arginine biosynthesis I (via L-ornithine) L-ascorbate degradation V guanosine nucleotides degradation II guanosine nucleotides degradation I arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle glutamine degradation I ascorbate glutathione cycle pyrimidine salvage pathway adenosine nucleotides degradation I Fatty acid biosynthesis Lipoic acid metabolism Nicotinate and nicotinamide metabolism Glutathione metabolism Biotin metabolism Alanine, aspartate and glutamate metabolism | details |
| TreatCFM001192 | mannosylglycoprotein endo-beta-mannosidase activity oxidoreductase_activity,_acting_on_paired_donors,_with_incorporation_or_reduction_of_molecular_oxygen,_NAD(P)H_as_one_donor,_and_incorporation_of_two_atoms_of_oxygen_into_one_donor aromatic compound catabolic process 2 iron, 2 sulfur cluster binding protein tyrosine/serine/threonine phosphatase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 glycine betaine biosynthesis III (plants) starch degradation II Glycine, serine and threonine metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
Expression profiles
 Show details about module gene expression profiling |