TreatCFM001184 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| lipoate biosynthetic process | 0.01478332 | GO:0009107 |
| RNA modification | 0.020658555 | GO:0009451 |
| pseudouridine synthesis | 0.020658555 | GO:0001522 |
| lipoate synthase activity | 0.028138388 | GO:0016992 |
| 4 iron, 4 sulfur cluster binding | 0.028138388 | GO:0051539 |
| pseudouridine synthase activity | 0.035605045 | GO:0009982 |
| lipoate biosynthesis and incorporation II | 0.020617225 | plantCyc |
| lipoate biosynthesis and incorporation I | 0.020617225 | plantCyc |
| UMP biosynthesis | 0.020617225 | plantCyc |
| arginine biosynthesis I (via L-ornithine) | 0.020617225 | plantCyc |
| L-ascorbate degradation V | 0.023615745 | plantCyc |
| guanosine nucleotides degradation II | 0.02431457 | plantCyc |
| guanosine nucleotides degradation I | 0.02431457 | plantCyc |
| arginine biosynthesis II (acetyl cycle) | 0.02431457 | plantCyc |
| ornithine-citrulline shuttle | 0.024655101 | plantCyc |
| glutamine degradation I | 0.024655101 | plantCyc |
| ascorbate glutathione cycle | 0.024655101 | plantCyc |
| pyrimidine salvage pathway | 0.024731865 | plantCyc |
| adenosine nucleotides degradation I | 0.043065593 | plantCyc |
| Fatty acid biosynthesis | 0.020617225 | KEGG |
| Lipoic acid metabolism | 0.020691882 | KEGG |
| Nicotinate and nicotinamide metabolism | 0.029413886 | KEGG |
| Glutathione metabolism | 0.029413886 | KEGG |
| Biotin metabolism | 0.029413886 | KEGG |
| Alanine, aspartate and glutamate metabolism | 0.029413886 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g102540.2 | SUPPRESSOR OF AUXIN RESISTANCE1 | AT1G33410 (0) |
| Solyc06g060260.2 | stromal ascorbate peroxidase | AT4G08390 (2.00E-145) |
| Solyc06g075340.2 | carbamoyl phosphate synthetase B | AT1G29900 (0) |
| Solyc07g049570.2 | Beta-ketoacyl synthase | AT2G04540 (0) |
| Solyc11g005810.1 | AT4G27620 (5.00E-87) | |
| Solyc11g008360.1 | pseudouridine synthase family protein | AT2G39140 (5.00E-136) |
| Solyc11g020300.1 | hydroxyproline-rich glycoprotein family protein | AT5G16620 (9.00E-99) |
| Solyc12g098830.1 | HAD-superfamily hydrolase, subfamily IG, 5\'-nucleotidase | AT5G48960 (0) |
| Solyc12g099700.1 | Radical SAM superfamily protein | AT5G08415 (3.00E-162) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000227 | unfolded protein binding protein folding ATP binding L-ascorbate degradation V ascorbate glutathione cycle Glutathione metabolism | details |
| TreatCFM000288 | 5'-3'_DNA_helicase_activity single-stranded DNA binding nucleotidyltransferase activity protein transport ornithine-citrulline shuttle guanosine nucleotides degradation I arginine biosynthesis II (acetyl cycle) glutamine degradation I pyrimidine salvage pathway UMP biosynthesis guanosine nucleotides degradation II arginine biosynthesis I (via L-ornithine) adenosine nucleotides degradation I RNA transport Alanine, aspartate and glutamate metabolism Nicotinate and nicotinamide metabolism | details |
| TreatCFM000399 | outer membrane Arp2/3_protein_complex ATP-dependent peptidase activity aminoacyl-tRNA hydrolase activity tetrahydrofolylpolyglutamate synthase activity protein insertion into membrane actin_filament_organization Arp2/3_complex-mediated_actin_nucleation folic acid-containing compound biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc folate polyglutamylation guanosine nucleotides degradation I guanosine nucleotides degradation II tetrahydrofolate biosynthesis II pyrimidine salvage pathway starch biosynthesis adenosine nucleotides degradation I Nicotinate and nicotinamide metabolism Antifolate resistance | details |
| TreatCFM000616 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 | details |
| TreatCFM000731 | NADP binding amino acid binding cellular amino acid metabolic process UMP biosynthesis lysine biosynthesis VI homoserine biosynthesis arginine biosynthesis I (via L-ornithine) arginine biosynthesis II (acetyl cycle) glutamine degradation I ornithine-citrulline shuttle Monobactam biosynthesis Alanine, aspartate and glutamate metabolism | details |
| TreatCFM001296 | 5-amino-6-(5-phosphoribosylamino)uracil reductase activity riboflavin biosynthetic process iron-sulfur cluster assembly DNA binding Transcription_related, Transcription regulator: HB flavin biosynthesis I (bacteria and plants) | details |
| TreatCFM001453 | lipoate biosynthetic process large ribosomal subunit lipoate synthase activity 4 iron, 4 sulfur cluster binding iron-sulfur cluster binding Transcription_related, Transcription factor: OFP lipoate biosynthesis and incorporation I lipoate biosynthesis and incorporation II Lipoic acid metabolism | details |
Expression profiles
 Show details about module gene expression profiling |