TreatCFM000526 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| SAGA-type_complex | 0.00100731 | GO:0070461 |
| transcription_corepressor_activity | 0.006901266 | GO:0003714 |
| small GTPase mediated signal transduction | 0.026503574 | GO:0007264 |
| transcription, DNA-dependent | 0.04447058 | GO:0006351 |
| Transcription_related, Transcription factor: C2H2 | 0.042111947 | gene family |
| Transcription_related, Transcription factor: bHLH | 0.042111947 | gene family |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g079540.2 | secretion-associated RAS super family 2 | AT4G02080 (3.00E-85) |
| Solyc02g090190.1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | AT2G23520 (0) |
| Solyc03g117820.1 | AT2G24530 (4.00E-76) | |
| Solyc06g072300.2 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | AT1G48410 (0) |
| Solyc09g089870.2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | AT4G14410 (2.00E-42) |
| Solyc10g077110.1 | transcription factor IIIA | AT1G72050 (2.00E-105) |
| Solyc11g010240.1 | Protein of unknown function (DUF3550/UPF0682) | AT4G40050 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000359 | GTP binding RNA methylation RNA methyltransferase activity O-methyltransferase activity Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX Transcription_related, Transcription factor: SBP Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM000525 | SAGA-type_complex aspartic-type endopeptidase activity transcription_corepressor_activity microtubule Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family | details |
| TreatCFM000651 | transcription_corepressor_activity transcription, DNA-dependent Transcription_related, Transcription factor: bHLH | details |
| TreatCFM000677 | protein phosphatase type 2A complex protein phosphatase type 2A regulator activity small GTPase mediated signal transduction signal transduction GTP binding | details |
| TreatCFM000802 | glycogen_phosphorylase_activity ADP_binding small GTPase mediated signal transduction protein dephosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc Insulin resistance | details |
| TreatCFM001060 | small GTPase mediated signal transduction response to hormone stimulus Transcription_related, Transcription regulator: ARF zeaxanthin, antheraxanthin and violaxanthin interconversion Carotenoid biosynthesis | details |
| TreatCFM001078 | small GTPase mediated signal transduction | details |
| TreatCFM001079 | microtubule organizing center spindle pole polysaccharide catabolic process microtubule cytoskeleton organization beta-amylase activity small GTPase mediated signal transduction Transcription_related, Transcription factor: BES1 Transcription_related, Transcription regulator: PHD MicroRNAs in cancer hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001269 | Transcription_related, Transcription factor: C2H2 Starch and sucrose metabolism | details |
| TreatCFM001284 | retrograde transport, endosome to Golgi small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |