TreatCFM000643 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| mRNA_cleavage_factor_complex | 0.005178216 | GO:0005849 |
| mRNA_polyadenylation | 0.006212875 | GO:0006378 |
| mRNA_binding | 0.027579649 | GO:0003729 |
| γ-glutamyl cycle | 0.007595919 | plantCyc |
| Peroxisome | 0.008270731 | KEGG |
| purine deoxyribonucleosides salvage | 0.021772692 | plantCyc |
| adenosine ribonucleotides de novo biosynthesis | 0.038266022 | plantCyc |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g009630.2 | Cleavage/polyadenylation specificity factor, 25kDa subunit | AT4G25550 (2.00E-102) |
| Solyc01g068150.2 | AT3G62140 (2.00E-58) | |
| Solyc01g109400.2 | Quinone reductase family protein | AT4G36750 (2.00E-86) |
| Solyc03g007440.2 | plastid division1 | AT5G53280 (6.00E-31) |
| Solyc03g097230.1 | AIG2-like (avirulence induced gene) family protein | AT3G02910 (2.00E-58) |
| Solyc04g076080.2 | Chaperone DnaJ-domain superfamily protein | AT2G33735 (1.00E-35) |
| Solyc05g049940.2 | ||
| Solyc06g060720.2 | peroxin 19-1 | AT5G17550 (3.00E-72) |
| Solyc06g084160.2 | Protein kinase superfamily protein | AT5G26110 (3.00E-105) |
| Solyc07g066630.2 | short-chain dehydrogenase-reductase B | AT3G12800 (2.00E-120) |
| Solyc09g092040.2 | ubiquitin-associated (UBA)/TS-N domain-containing protein | AT1G04850 (1.00E-31) |
| Solyc11g072410.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT5G60340 (3.00E-60) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000795 | mRNA_cleavage_factor_complex mRNA_polyadenylation mRNA_binding protein serine/threonine kinase activity Peroxisome | details |
| TreatCFM000885 | mitochondrial_respiratory_chain_complex_IV_assembly mRNA_polyadenylation aminoacyl-tRNA_editing_activity mRNA_binding mRNA_cleavage_factor_complex mitochondrion Peroxisome tRNA charging Aminoacyl-tRNA biosynthesis | details |
| TreatCFM001044 | aminoacyl-tRNA hydrolase activity superoxide dismutase activity superoxide metabolic process protein transport Transcription_related, Transcription factor: ERF reactive oxygen species degradation (mammalian) superoxide radicals degradation Prion diseases | details |
| TreatCFM001068 | Peroxisome Ubiquinone and other terpenoid-quinone biosynthesis | details |
| TreatCFM001142 | methyltransferase activity γ-glutamyl cycle Glutathione metabolism | details |
| TreatCFM001167 | protein-phycocyanobilin_linkage γ-glutamyl cycle L-ascorbate degradation V ascorbate glutathione cycle Glutathione metabolism | details |
| TreatCFM001577 | Ubiquitin_Proteasome_system, E3: UBR-box | details |
| TreatCFM001603 | mRNA_polyadenylation mRNA_binding mRNA_cleavage_factor_complex Peroxisome | details |
Expression profiles
 Show details about module gene expression profiling |