TreatCFM000669 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| ATP-dependent chromatin remodeling | 0.003560946 | GO:0043044 |
| chromosome organization | 0.003560946 | GO:0051276 |
| chromatin remodeling | 0.005692922 | GO:0006338 |
| chromosome | 0.009315691 | GO:0005694 |
| nucleus | 0.010362302 | GO:0005634 |
| nucleosome binding | 0.016896647 | GO:0031491 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.036567271 | GO:0016818 |
| Transcription_related, Transcription regulator: SNF2 | 0.016207056 | gene family |
| MicroRNAs in cancer | 0.035382976 | KEGG |
| Tuberculosis | 0.035382976 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc03g058350.2 | eukaryotic translation initiation factor 2 (eIF-2) family protein | AT1G76810 (0) |
| Solyc03g097190.2 | Plant protein of unknown function (DUF827) | AT5G16730 (3.00E-81) |
| Solyc06g036590.1 | ||
| Solyc06g054560.2 | chromatin-remodeling protein 11 | AT3G06400 (0) |
| Solyc06g083870.2 | Structural maintenance of chromosomes (SMC) family protein | AT3G54670 (0) |
| Solyc07g063050.1 | ||
| Solyc07g065490.2 | DEK domain-containing chromatin associated protein | AT5G55660 (3.00E-54) |
| Solyc09g098250.2 | trithorax-like protein 2 | AT1G05830 (2.00E-96) |
| Solyc11g044340.1 | pre-mRNA-processing protein 40A | AT1G44910 (2.00E-136) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000285 | details | |
| TreatCFM000383 | ATP-dependent chromatin remodeling BLOC-1_complex chromatin remodeling nucleus nucleosome binding hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Transcription_related, Transcription regulator: SNF2 MicroRNAs in cancer Tuberculosis | details |
| TreatCFM000737 | ATP-dependent chromatin remodeling HAUS_complex chromatin remodeling spindle_assembly nucleus nucleosome binding kinesin complex microtubule-based movement hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Transcription_related, Transcription regulator: SNF2 Transcription_related, Transcription regulator: PHD MicroRNAs in cancer Tuberculosis | details |
| TreatCFM000764 | Transcription_related, Transcription factor: C2C2-Dof wax esters biosynthesis I Vitamin digestion and absorption | details |
| TreatCFM000904 | chromosome chromosome organization RNA binding RNA processing nucleotidyltransferase activity Transcription_related, Transcription regulator: Jumonji RNA degradation | details |
| TreatCFM001168 | integral_component_of_endoplasmic_reticulum_membrane spindle pole cytoskeleton microtubule organizing center macromolecule biosynthetic process microtubule_nucleation | details |
| TreatCFM001416 | chromatin binding Transcription_related, Transcription regulator: PHD Endocrine resistance MicroRNAs in cancer | details |
Expression profiles
 Show details about module gene expression profiling |