TreatCFM001041 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| Ubiquitin_Proteasome_system, DUB: ULP | 0.044490422 | gene family |
| Transcription_related, Transcription regulator: Orphans | 0.044490422 | gene family |
| allantoin degradation to ureidoglycolate II (ammonia producing) | 0.001036031 | plantCyc |
| Purine metabolism | 0.013138122 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g068380.2 | allantoate amidohydrolase | AT4G20070 (0) |
| Solyc03g034300.1 | 50S ribosomal protein-related | |
| Solyc03g096460.2 | Lipase/lipooxygenase, PLAT/LH2 family protein | AT4G39730 (7.00E-52) |
| Solyc03g113720.2 | response regulator 6 | AT5G62920 (5.00E-57) |
| Solyc08g076520.2 | ||
| Solyc08g076960.1 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | AT4G17870 (6.00E-82) |
| Solyc09g007980.1 | ||
| Solyc09g062980.1 | ||
| Solyc12g044480.1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000165 | Transcription_related, Transcription factor: B3 | details |
| TreatCFM000189 | cell wall cell wall modification pectinesterase activity enzyme inhibitor activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Cytochrome_P450, Cytochrome P450: CYP84A homogalacturonan degradation Pentose and glucuronate interconversions | details |
| TreatCFM000317 | S-adenosylmethionine_biosynthetic_process aspartic-type endopeptidase activity methionine adenosyltransferase activity S-adenosyl-L-methionine biosynthesis methionine salvage cycle I (bacteria and plants) justicidin B biosynthesis methionine salvage cycle III (animals) methionine degradation I (to homocysteine) S-adenosyl-L-methionine cycle II matairesinol biosynthesis methionine salvage cycle II (plants) ethylene biosynthesis I (plants) Cysteine and methionine metabolism | details |
| TreatCFM000474 | transport transporter activity justicidin B biosynthesis isoflavonoid biosynthesis II matairesinol biosynthesis | details |
| TreatCFM000638 | coenzyme binding Transcription_related, Transcription factor: NF-YC allantoin degradation to ureidoglycolate II (ammonia producing) Purine metabolism Sesquiterpenoid and triterpenoid biosynthesis | details |
| TreatCFM000747 | S-adenosylmethionine_biosynthetic_process cell wall methionine adenosyltransferase activity Cytochrome_P450, Cytochrome P450: CYP724B hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 S-adenosyl-L-methionine biosynthesis methionine salvage cycle III (animals) allantoin degradation to ureidoglycolate II (ammonia producing) methionine salvage cycle I (bacteria and plants) S-adenosyl-L-methionine cycle II methionine degradation I (to homocysteine) brassinosteroid biosynthesis I brassinosteroid biosynthesis II methionine salvage cycle II (plants) ethylene biosynthesis I (plants) Cysteine and methionine metabolism Purine metabolism | details |
| TreatCFM000837 | hydrolase activity serine-type endopeptidase inhibitor activity response to wounding Transcription_related, Transcription factor: LOB allantoin degradation to ureidoglycolate II (ammonia producing) asparagine degradation I Cyanoamino acid metabolism Purine metabolism | details |
| TreatCFM000925 | methionine metabolic process S-adenosylmethionine_biosynthetic_process methylenetetrahydrofolate reductase (NADPH) activity methionine adenosyltransferase activity allantoin degradation to ureidoglycolate II (ammonia producing) methionine salvage cycle III (animals) methionine salvage cycle I (bacteria and plants) S-adenosyl-L-methionine biosynthesis S-adenosyl-L-methionine cycle II methionine degradation I (to homocysteine) fatty acid biosynthesis initiation I octanoyl-ACP biosynthesis (mitochondria, yeast) adenine and adenosine salvage II folate transformations II methionine salvage cycle II (plants) ethylene biosynthesis I (plants) Purine metabolism Cysteine and methionine metabolism Antifolate resistance Insulin resistance | details |
| TreatCFM000990 | response to wounding serine-type endopeptidase inhibitor activity Transcription_related, Transcription factor: C2C2-Dof asparagine degradation I Cyanoamino acid metabolism | details |
| TreatCFM001206 | allantoin degradation to ureidoglycolate II (ammonia producing) γ-glutamyl cycle | details |
| TreatCFM001409 | Asthma | details |
| TreatCFM001484 | serine-type peptidase activity polysaccharide_binding Ubiquitin_Proteasome_system, E2: UBC allantoin degradation to ureidoglycolate II (ammonia producing) Purine metabolism Quorum sensing | details |
| TreatCFM001517 | S-adenosylmethionine_biosynthetic_process methionine adenosyltransferase activity allantoin degradation to ureidoglycolate II (ammonia producing) S-adenosyl-L-methionine biosynthesis methionine salvage cycle I (bacteria and plants) methionine salvage cycle III (animals) methionine degradation I (to homocysteine) S-adenosyl-L-methionine cycle II methionine salvage cycle II (plants) ethylene biosynthesis I (plants) Cysteine and methionine metabolism Purine metabolism Asthma | details |
| TreatCFM001601 | steroid biosynthetic process 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor transmembrane_transporter_activity allantoin degradation to ureidoglycolate II (ammonia producing) UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) UDP-sugars interconversion L-ascorbate biosynthesis V superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis Purine metabolism Amino sugar and nucleotide sugar metabolism | details |
Expression profiles
 Show details about module gene expression profiling |