TreatCFM001236 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| protein methylation | 1.56045E-05 | GO:0006479 |
| core TFIIH complex | 0.001036105 | GO:0000439 |
| peptidyl-arginine_N-methylation | 0.001972046 | GO:0035246 |
| methyltransferase activity | 0.00317873 | GO:0008168 |
| nucleotide-excision repair | 0.009851007 | GO:0006289 |
| chromatin binding | 0.019694925 | GO:0003682 |
| protein ubiquitination | 0.046037259 | GO:0016567 |
| Transcription_related, Transcription regulator: PHD | 0.008778418 | gene family |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc04g008860.2 | protein arginine methyltransferase 6 | AT3G20020 (3.00E-166) |
| Solyc06g054540.2 | CHY-type/CTCHY-type/RING-type Zinc finger protein | AT5G18650 (3.00E-134) |
| Solyc06g071450.2 | basal transcription factor complex subunit-related | AT1G18340 (4.00E-110) |
| Solyc07g049210.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | AT4G22140 (6.00E-105) |
| Solyc08g005970.2 | SHK1 binding protein 1 | AT4G31120 (0) |
| Solyc08g067070.2 | DNA methyltransferase-2 | AT5G25480 (1.00E-136) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000091 | protein_prenylation protein methylation protein prenyltransferase activity Transcription_related, Transcription factor: B3 | details |
| TreatCFM000969 | mitochondrion_organization terpenoid biosynthetic process 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity isocitrate lyase activity prenyltransferase activity carboxylic acid metabolic process chromatin binding Transcription_related, Transcription regulator: PHD methylerythritol phosphate pathway I methylerythritol phosphate pathway II vitamin E biosynthesis (tocotrienols) Nicotinate and nicotinamide metabolism Ubiquinone and other terpenoid-quinone biosynthesis Terpenoid backbone biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |