TreatCFM001252 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| proteasome core complex | 1.66825E-07 | GO:0005839 |
| threonine-type endopeptidase activity | 1.66825E-07 | GO:0004298 |
| proteolysis involved in cellular protein catabolic process | 2.52765E-07 | GO:0051603 |
| endopeptidase activity | 1.3517E-05 | GO:0004175 |
| proteasome core complex, alpha-subunit complex | 1.3517E-05 | GO:0019773 |
| ubiquitin-dependent protein catabolic process | 0.001069837 | GO:0006511 |
| proton-transporting ATP synthase complex assembly | 0.001599112 | GO:0043461 |
| Proteasome | 5.46E-07 | KEGG |
| hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | 0.004883785 | gene famuly |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g093690.2 | ATP12 protein-related | AT5G40660 (2.00E-108) |
| Solyc04g081300.2 | glycosyl hydrolase 9B5 | AT1G19940 (0) |
| Solyc05g010290.1 | AT3G25545 (2.00E-62) | |
| Solyc05g056090.2 | AT2G35790 (3.00E-66) | |
| Solyc07g016200.2 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | AT4G31300 (4.00E-110) |
| Solyc09g011420.2 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | AT4G22380 (6.00E-57) |
| Solyc10g081130.1 | 20S proteasome alpha subunit G1 | AT2G27020 (1.00E-123) |
| Solyc10g084620.1 | AT3G53630 (5.00E-44) | |
| Solyc11g013260.1 | prohibitin 3 | AT5G40770 (6.00E-111) |
| Solyc12g009140.1 | 20S proteasome subunit PAA2 | AT2G05840 (3.00E-134) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000251 | hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM000937 | proteasome core complex, alpha-subunit complex proteasome core complex endopeptidase activity threonine-type endopeptidase activity proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process polysaccharide catabolic process beta-amylase activity fatty acid biosynthetic process Proteasome starch degradation II Steroid biosynthesis hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001028 | proton-transporting ATP synthase complex assembly spermidine biosynthetic process spermine biosynthetic process adenosylmethionine decarboxylase activity double-stranded DNA binding spliceosomal complex nuclear mRNA splicing, via spliceosome mitochondrion Transcription_related, Transcription factor: mTERF spermine biosynthesis spermidine biosynthesis I Arginine and proline metabolism | details |
| TreatCFM001253 | 5S rRNA binding | details |
| TreatCFM001255 | carbohydrate metabolic process Starch and sucrose metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001288 | extracellular space integral to membrane hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001289 | extracellular space acyl-CoA oxidase activity acyl-CoA dehydrogenase activity fatty acid beta-oxidation Peroxisome jasmonic acid biosynthesis Starch and sucrose metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001306 | ribosome structural constituent of ribosome 5S rRNA binding translation methyltransferase activity Biotin metabolism | details |
| TreatCFM001343 | Transcription_related, Transcription regulator: MBF1 hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001394 | Starch and sucrose metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001562 | mitochondrial envelope methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity isocitrate dehydrogenase (NADP+) activity isocitrate metabolic process folic acid-containing compound biosynthetic process cytochrome-c oxidase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate folate transformations II tetrahydrofolate biosynthesis II glutamine biosynthesis III One carbon pool by folate hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001581 | proteasome core complex threonine-type endopeptidase activity proteolysis involved in cellular protein catabolic process proton-transporting ATP synthase complex assembly endopeptidase activity proteasome core complex, alpha-subunit complex ubiquitin-dependent protein catabolic process Proteasome | details |
| TreatCFM001582 | proteasome core complex threonine-type endopeptidase activity proteolysis involved in cellular protein catabolic process mRNA_cleavage_factor_complex mRNA_binding mRNA_polyadenylation ubiquitin-dependent protein catabolic process Proteasome | details |
| TreatCFM001592 | proteasome core complex, alpha-subunit complex proteasome core complex endopeptidase activity threonine-type endopeptidase activity proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process spermine biosynthetic process spermidine biosynthetic process adenosylmethionine decarboxylase activity Proteasome spermidine biosynthesis I spermine biosynthesis Arginine and proline metabolism | details |
Expression profiles
 Show details about module gene expression profiling |