TreatCFM001378 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| clathrin coat of coated pit | 0.003165832 | GO:0030132 |
| clathrin coat of trans-Golgi network vesicle | 0.003165832 | GO:0030130 |
| cofactor binding | 0.003598572 | GO:0048037 |
| structural molecule activity | 0.010786395 | GO:0005198 |
| intracellular protein transport | 0.0389724 | GO:0006886 |
| vesicle-mediated transport | 0.0389724 | GO:0016192 |
| TCA cycle variation V (plant) | 0.009692673 | plantCyc |
| TCA cycle II (plants and fungi) | 0.009692673 | plantCyc |
| Carbon fixation pathways in prokaryotes | 0.00187018 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g007910.2 | Succinyl-CoA ligase, alpha subunit | AT5G23250 (4.00E-164) |
| Solyc02g062910.1 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT4G36680 (7.00E-126) |
| Solyc03g006510.2 | Clathrin light chain protein | AT2G20760 (6.00E-50) |
| Solyc03g080050.2 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | AT4G27585 (3.00E-143) |
| Solyc09g061430.2 | GTP-binding family protein | AT3G07050 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000664 | Protein_kinases_phosphatases, PPC:5.2.1: Other Kinase | details |
| TreatCFM000814 | clathrin coat of coated pit clathrin coat of trans-Golgi network vesicle adenylate kinase activity nucleobase-containing compound kinase activity structural molecule activity nucleobase-containing compound metabolic process vesicle-mediated transport intracellular protein transport formation of glycosidic bonds, GlycosylTransferases: GTnc adenosine ribonucleotides de novo biosynthesis Ribosome biogenesis in eukaryotes Endocrine resistance | details |
| TreatCFM001097 | clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor structural molecule activity phospholipid binding GTPase activator activity N-acetyltransferase_activity Transcription_related, Transcription regulator: GNAT arginine biosynthesis II (acetyl cycle) pyruvate decarboxylation to acetyl CoA ornithine biosynthesis Arginine biosynthesis Diterpenoid biosynthesis Central carbon metabolism in cancer | details |
| TreatCFM001548 | nucleolus four-way junction helicase activity ion channel activity membrane ribosome biogenesis DNA recombination ion transport Synaptic vesicle cycle | details |
| TreatCFM001560 | dolichyl-diphosphooligosaccharide-protein glycotransferase activity cofactor binding mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity posttranscriptional_gene_silencing_by_RNA transcription cofactor activity endoplasmic reticulum protein glycosylation tRNA processing flavin adenine dinucleotide binding 2-oxoglutarate decarboxylation to succinyl-CoA glycine cleavage pyruvate decarboxylation to acetyl CoA TCA cycle II (plants and fungi) TCA cycle variation V (plant) 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Other glycan degradation Valine, leucine and isoleucine degradation Protein processing in endoplasmic reticulum Carbon fixation pathways in prokaryotes hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
Expression profiles
 Show details about module gene expression profiling |