TreatCFM001548 module
|
Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| nucleolus | 0.00259045 | GO:0005730 |
| four-way junction helicase activity | 0.013275646 | GO:0009378 |
| ion channel activity | 0.013275646 | GO:0005216 |
| membrane | 0.01465961 | GO:0016020 |
| ribosome biogenesis | 0.02360671 | GO:0042254 |
| DNA recombination | 0.02360671 | GO:0006310 |
| ion transport | 0.02360671 | GO:0006811 |
| Synaptic vesicle cycle | 0.001898843 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc03g080050.2 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | AT4G27585 (3.00E-143) |
| Solyc03g095470.2 | AT2G40800 (2.00E-111) | |
| Solyc07g047670.2 | pescadillo-related | AT5G14520 (0) |
| Solyc11g068670.1 | AT3G44330 (0) | |
| Solyc11g069720.1 | ATPase, AAA-type, CDC48 protein | AT5G03340 (0) |
| Solyc12g010010.1 | cyclic nucleotide gated channel 5 | AT5G57940 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001143 | autophagy cytoplasm DNA recombination small protein activating enzyme activity four-way junction helicase activity Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Ubiquitin_Proteasome_system, E1: ThiF molybdenum cofactor biosynthesis Sulfur relay system Synaptic vesicle cycle | details |
| TreatCFM001146 | Transcription_related, Transcription factor: GeBP Herpes simplex infection | details |
| TreatCFM001345 | nucleolus ion channel activity four-way junction helicase activity ion transport ribosome biogenesis DNA recombination Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase Synaptic vesicle cycle | details |
| TreatCFM001378 | clathrin coat of coated pit clathrin coat of trans-Golgi network vesicle cofactor binding structural molecule activity intracellular protein transport vesicle-mediated transport TCA cycle variation V (plant) TCA cycle II (plants and fungi) Carbon fixation pathways in prokaryotes | details |
| TreatCFM001581 | proteasome core complex threonine-type endopeptidase activity proteolysis involved in cellular protein catabolic process proton-transporting ATP synthase complex assembly endopeptidase activity proteasome core complex, alpha-subunit complex ubiquitin-dependent protein catabolic process Proteasome | details |
| TreatCFM001618 | ion transport amino_acid_transmembrane_transport amino acid transmembrane transporter activity transporter activity Vitamin digestion and absorption | details |
Expression profiles
 Show details about module gene expression profiling |