TreatCFM001576 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| sulfate assimilation | 0.000345468 | GO:0000103 |
| adenylylsulfate_kinase_activity | 0.002878899 | GO:0004020 |
| outer membrane | 0.003108316 | GO:0019867 |
| sulfate activation for sulfonation | 0.001208703 | plantCyc |
| Monobactam biosynthesis | 0.017531459 | KEGG |
| Longevity regulating pathway - worm | 0.017531459 | KEGG |
| Herpes simplex infection | 0.036123131 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g058320.2 | ||
| Solyc01g099690.2 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | AT1G09130 (1.00E-134) |
| Solyc02g092410.2 | APS kinase | AT2G14750 (7.00E-92) |
| Solyc04g079270.2 | Outer membrane OMP85 family protein | AT5G05520 (0) |
| Solyc07g062180.2 | Protein of unknown function DUF92, transmembrane | AT1G78620 (5.00E-115) |
| Solyc12g044860.1 | DEA(D/H)-box RNA helicase family protein | AT1G55150 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000603 | glycerol-3-phosphate dehydrogenase complex glycerol-3-phosphate metabolic process glycerol-3-phosphate catabolic process glycerol-3-phosphate dehydrogenase [NAD+] activity isoprenoid biosynthetic process superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of phylloquinol biosynthesis glycerol-3-phosphate shuttle jasmonic acid biosynthesis Terpenoid backbone biosynthesis Non-small cell lung cancer MAPK signaling pathway - yeast Longevity regulating pathway - worm | details |
| TreatCFM000628 | Transcription_related, Transcription regulator: C3H | details |
| TreatCFM001200 | outer membrane glycerol-3-phosphate dehydrogenase complex glycerol-3-phosphate metabolic process mRNA_3'-end_processing glycerol-3-phosphate catabolic process glycerol-3-phosphate dehydrogenase [NAD+] activity cofactor binding Transcription_related, Transcription regulator: SWI/SNF-BAF60b glycerol-3-phosphate shuttle TCA cycle II (plants and fungi) TCA cycle variation V (plant) MAPK signaling pathway - yeast Carbon fixation pathways in prokaryotes | details |
| TreatCFM001356 | sulfate assimilation adenylylsulfate_kinase_activity sulfate activation for sulfonation Monobactam biosynthesis | details |
| TreatCFM001558 | glycerol-3-phosphate dehydrogenase complex outer membrane glycerol-3-phosphate catabolic process glycerol-3-phosphate metabolic process glycerol-3-phosphate dehydrogenase [NAD+] activity NAD binding oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Ubiquitin_Proteasome_system, DUB: OTU glycerol-3-phosphate shuttle jasmonic acid biosynthesis MAPK signaling pathway - yeast | details |
| TreatCFM001624 | sulfate assimilation proton-transporting V-type ATPase, V1 domain adenylylsulfate_kinase_activity ATP hydrolysis coupled proton transport integral to membrane ubiquitin-dependent protein catabolic process hydrogen ion transmembrane transporter activity coenzyme binding Transcription_related, Transcription factor: BES1 Ubiquitin_Proteasome_system, E3 adaptor: SKP1 sulfate activation for sulfonation Monobactam biosynthesis Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |